8I3V

Cryo-EM structure of human norepinephrine transporter NET in the presence of the antidepressant escitalopram in an inward-open state at resolution of 2.85 angstrom.

• PDB DOI: https://doi.org/10.2210/pdb8I3V/pdb
• EM Map EMD-35157: EMDB EMDataResource

• Classification: MEMBRANE PROTEIN
• Organism(s): Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): No 
• Membrane Protein: Yes  PDBTM


• Deposited: 2023-01-18 Released: 2024-07-03 
• Deposition Author(s): Tan, J., Xiao, Y., Kong, F., Lei, J., Yuan, Y., Yan, C.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.85 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Molecular basis for the reuptake and inhibition of human norepinephrine transporter

Tan, J., Xiao, Y., Kong, F., Lei, J., Yuan, Y., Yan, C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 69.75 kDa 
• Atom Count: 4,419 
• Modelled Residue Count: 548 
• Deposited Residue Count: 617 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sodium-dependent noradrenaline transporter	A	617	Homo sapiens	Mutation(s): 0  Gene Names: SLC6A2, NAT1, NET1, SLC6A5 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P23975 (Homo sapiens) Explore P23975  Go to UniProtKB:  P23975
GTEx:  ENSG00000103546

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
68P (Subject of Investigation/LOI)	B [auth A]	(1S)-1-[3-(dimethylamino)propyl]-1-(4-fluorophenyl)-1,3-dihydro-2-benzofuran-5-carbonitrile C20 H21 F N2 O WSEQXVZVJXJVFP-FQEVSTJZSA-N
CL (Subject of Investigation/LOI)	C [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.85 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-07-03 
Deposition Author(s): Tan, J., Xiao, Y., Kong, F., Lei, J., Yuan, Y., Yan, C.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-07-03
  Type: Initial release