8HYA

Cryo-EM structure of Arabidopsis thaliana SOS1 in an occluded state, with expanded TMD


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Architecture and autoinhibitory mechanism of the plasma membrane Na + /H + antiporter SOS1 in Arabidopsis.

Wang, Y.Pan, C.Chen, Q.Xie, Q.Gao, Y.He, L.Li, Y.Dong, Y.Jiang, X.Zhao, Y.

(2023) Nat Commun 14: 4487-4487

  • DOI: https://doi.org/10.1038/s41467-023-40215-y
  • Primary Citation of Related Structures:  
    7Y3E, 8HYA

  • PubMed Abstract: 

    Salt-overly-sensitive 1 (SOS1) is a unique electroneutral Na + /H + antiporter at the plasma membrane of higher plants and plays a central role in resisting salt stress. SOS1 is kept in a resting state with basal activity and activated upon phosphorylation. Here, we report the structures of SOS1. SOS1 forms a homodimer, with each monomer composed of transmembrane and intracellular domains. We find that SOS1 is locked in an occluded state by shifting of the lateral-gate TM5b toward the dimerization domain, thus shielding the Na + /H + binding site. We speculate that the dimerization of the intracellular domain is crucial to stabilize the transporter in this specific conformation. Moreover, two discrete fragments and a residue W1013 are important to prevent the transition of SOS1 to an alternative conformational state, as validated by functional complementation assays. Our study enriches understanding of the alternate access model of eukaryotic Na + /H + exchangers.


  • Organizational Affiliation

    National Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, 100101, Beijing, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Sodium/hydrogen exchanger 7
A, B
1,146Arabidopsis thalianaMutation(s): 0 
Gene Names: SOS1
Membrane Entity: Yes 
UniProt
Find proteins for Q9LKW9 (Arabidopsis thaliana)
Explore Q9LKW9 
Go to UniProtKB:  Q9LKW9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9LKW9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Chinese Academy of SciencesChinaXDB37030304

Revision History  (Full details and data files)

  • Version 1.0: 2023-08-09
    Type: Initial release
  • Version 1.1: 2024-05-08
    Changes: Data collection, Database references