Download MendeleyThe crystal structure of EGFR kinase domain(T790M/L858R) in complex with compound 28f
Wang, Y.X., Wu, C.Y.To be published.
8HY7
EGFR kinase domain mutant "TMLR" with compound 28f
- PDB DOI: https://doi.org/10.2210/pdb8HY7/pdb
- Classification: STRUCTURAL PROTEIN
- Organism(s): Homo sapiens
- Expression System: Spodoptera frugiperda
- Mutation(s): Yes
- Deposited: 2023-01-06 Released: 2023-08-23
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.91 Å
- R-Value Free: 0.251
- R-Value Work: 0.195
- R-Value Observed: 0.198
Starting Model: experimental
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This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Epidermal growth factor receptor | 330 | Homo sapiens | Mutation(s): 5 Gene Names: EGFR, ERBB, ERBB1, HER1 EC: 2.7.10.1 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P00533 (Homo sapiens) Explore P00533 Go to UniProtKB: P00533 | |||||
PHAROS: P00533 GTEx: ENSG00000146648 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00533 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NSO (Subject of Investigation/LOI) Query on NSO | B [auth A] | ~{N}-[3-[[6-fluoranyl-2-[[4-(4-methylpiperazin-1-yl)phenyl]amino]quinazolin-4-yl]amino]phenyl]prop-2-enamide C28 H28 F N7 O KDWNVZXLHSMELQ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.91 Å
- R-Value Free: 0.251
- R-Value Work: 0.195
- R-Value Observed: 0.198
- Space Group: I 2 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 146.2 | α = 90 |
| b = 146.2 | β = 90 |
| c = 146.2 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| autoXDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-08-23 Deposition Author(s): Wang, Y.X., Wu, C.Y.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-08-23
Type: Initial release
