8HQS

Cryo-EM structure of 8-subunit Smc5/6 head region

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history. 


Literature

Cryo-EM structures of Smc5/6 in multiple states reveal its assembly and functional mechanisms.

Qian, L., Jun, Z., Xiang, Z., Wang, Z., Tong, C., Duo, J., Zhenguo, C., Wang, L.

(2024) Nat Struct Mol Biol 


Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Structural maintenance of chromosomes protein 51,093Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: SMC5
UniProt
Find proteins for Q08204 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q08204 
Go to UniProtKB:  Q08204
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ08204
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Structural maintenance of chromosomes protein 61,114Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: SMC6
UniProt
Find proteins for Q12749 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12749 
Go to UniProtKB:  Q12749
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12749
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
DNA repair protein KRE29C [auth D]464Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: KRE29
UniProt
Find proteins for P40026 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P40026 
Go to UniProtKB:  P40026
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40026
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Non-structural maintenance of chromosome element 5D [auth E]556Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: NSE5
UniProt
Find proteins for Q03718 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q03718 
Go to UniProtKB:  Q03718
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ03718
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Non-structural maintenance of chromosomes element 1E [auth F]336Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: NSE1
EC: 2.3.2.27
UniProt
Find proteins for Q07913 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q07913 
Go to UniProtKB:  Q07913
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ07913
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Non-structural maintenance of chromosome element 3F [auth G]303Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: NSE3
UniProt
Find proteins for Q05541 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q05541 
Go to UniProtKB:  Q05541
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ05541
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Non-structural maintenance of chromosome element 4G [auth H]402Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: NSE4
UniProt
Find proteins for P43124 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P43124 
Go to UniProtKB:  P43124
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP43124
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Other government--

Revision History  (Full details and data files)

  • Version 1.0: 2024-06-19
    Type: Initial release
  • Version 1.1: 2024-06-26
    Changes: Data collection, Database references