8HQ2

Crystal structure of human ADAM22 in complex with human LGI1 mutant

PDB DOI: https://doi.org/10.2210/pdb8HQ2/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): Yes

Deposited: 2022-12-13 Released: 2023-12-13
Deposition Author(s): Liu, H., Lin, Z., Xu, F.
Funding Organization(s): National Science Foundation (NSF, China)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.93 Å
R-Value Free: 0.291
R-Value Work: 0.245
R-Value Observed: 0.247

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of human ADAM22 in complex with human LGI1 mutant

Liu, H., Lin, Z., Xu, F.

To be published.

Macromolecule Content

Total Structure Weight: 231.49 kDa
Atom Count: 16,132
Modelled Residue Count: 2,000
Deposited Residue Count: 2,024
Unique protein chains: 2

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Disintegrin and metalloproteinase domain-containing protein 22	A, C [auth B]	486	Homo sapiens	Mutation(s): 0 Gene Names: ADAM22, MDC2
UniProt & NIH Common Fund Data Resources
Find proteins for Q9P0K1 (Homo sapiens) Explore Q9P0K1 Go to UniProtKB: Q9P0K1
PHAROS: Q9P0K1 GTEx: ENSG00000008277
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9P0K1
Glycosylation
Glycosylation Sites: 3	Glycosylation Focus chain A Focus chain C [auth B]	Go to GlyGen: Q9P0K1-1
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Leucine-rich glioma-inactivated protein 1	B [auth D], D [auth E]	526	Homo sapiens	Mutation(s): 3 Gene Names: LGI1, EPT, UNQ775/PRO1569
UniProt & NIH Common Fund Data Resources
Find proteins for O95970 (Homo sapiens) Explore O95970 Go to UniProtKB: O95970
PHAROS: O95970 GTEx: ENSG00000108231
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O95970
Glycosylation
Glycosylation Sites: 3	Glycosylation Focus chain B [auth D] Focus chain D [auth E]	Go to GlyGen: O95970-1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG Query on NAG Download Ideal Coordinates CCD File SDF format, chain H [auth A] SDF format, chain I [auth A] SDF format, chain J [auth A] SDF format, chain L [auth D] SDF format, chain M [auth D] SDF format, chain N [auth D] SDF format, chain R [auth B] SDF format, chain S [auth B] SDF format, chain T [auth B] SDF format, chain V [auth E] SDF format, chain W [auth E] SDF format, chain X [auth E] MOL2 format, chain H [auth A] MOL2 format, chain I [auth A] MOL2 format, chain J [auth A] MOL2 format, chain L [auth D] MOL2 format, chain M [auth D] MOL2 format, chain N [auth D] MOL2 format, chain R [auth B] MOL2 format, chain S [auth B] MOL2 format, chain T [auth B] MOL2 format, chain V [auth E] MOL2 format, chain W [auth E] MOL2 format, chain X [auth E] mmCIF format, chain H [auth A] mmCIF format, chain I [auth A] mmCIF format, chain J [auth A] mmCIF format, chain L [auth D] mmCIF format, chain M [auth D] mmCIF format, chain N [auth D] mmCIF format, chain R [auth B] mmCIF format, chain S [auth B] mmCIF format, chain T [auth B] mmCIF format, chain V [auth E] mmCIF format, chain W [auth E] mmCIF format, chain X [auth E]	H [auth A] I [auth A] J [auth A] L [auth D] M [auth D] H [auth A], I [auth A], J [auth A], L [auth D], M [auth D], N [auth D], R [auth B], S [auth B], T [auth B], V [auth E], W [auth E], X [auth E]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain H [auth A] Focus chain I [auth A] Focus chain J [auth A] Focus chain L [auth D] Focus chain M [auth D] Focus chain N [auth D] Focus chain R [auth B] Focus chain S [auth B] Focus chain T [auth B] Focus chain V [auth E] Focus chain W [auth E] Focus chain X [auth E] Interactions & Density Focus chain H [auth A] Focus chain I [auth A] Focus chain J [auth A] Focus chain L [auth D] Focus chain M [auth D] Focus chain N [auth D] Focus chain R [auth B] Focus chain S [auth B] Focus chain T [auth B] Focus chain V [auth E] Focus chain W [auth E] Focus chain X [auth E]
CA Query on CA Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain F [auth A] SDF format, chain G [auth A] SDF format, chain K [auth D] SDF format, chain O [auth B] SDF format, chain P [auth B] SDF format, chain Q [auth B] SDF format, chain U [auth E] MOL2 format, chain E [auth A] MOL2 format, chain F [auth A] MOL2 format, chain G [auth A] MOL2 format, chain K [auth D] MOL2 format, chain O [auth B] MOL2 format, chain P [auth B] MOL2 format, chain Q [auth B] MOL2 format, chain U [auth E] mmCIF format, chain E [auth A] mmCIF format, chain F [auth A] mmCIF format, chain G [auth A] mmCIF format, chain K [auth D] mmCIF format, chain O [auth B] mmCIF format, chain P [auth B] mmCIF format, chain Q [auth B] mmCIF format, chain U [auth E]	E [auth A] F [auth A] G [auth A] K [auth D] O [auth B] E [auth A], F [auth A], G [auth A], K [auth D], O [auth B], P [auth B], Q [auth B], U [auth E]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth A] Focus chain K [auth D] Focus chain O [auth B] Focus chain P [auth B] Focus chain Q [auth B] Focus chain U [auth E] Interactions & Density Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth A] Focus chain K [auth D] Focus chain O [auth B] Focus chain P [auth B] Focus chain Q [auth B] Focus chain U [auth E]