8HQ1

Crystal Structure Of Human Lgi1-Adam22 Complex In Space Group C2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.17 Å
  • R-Value Free: 0.314 
  • R-Value Work: 0.266 
  • R-Value Observed: 0.268 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure Of Human Lgi1-Adam22 Complex In Space Group C2

Liu, H.L.Lin, Z.H.Xu, F.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Disintegrin and metalloproteinase domain-containing protein 22
A, B, C
486Homo sapiensMutation(s): 0 
Gene Names: ADAM22MDC2
UniProt & NIH Common Fund Data Resources
Find proteins for Q9P0K1 (Homo sapiens)
Explore Q9P0K1 
Go to UniProtKB:  Q9P0K1
PHAROS:  Q9P0K1
GTEx:  ENSG00000008277 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9P0K1
Glycosylation
Glycosylation Sites: 3Go to GlyGen: Q9P0K1-1
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Leucine-rich glioma-inactivated protein 1
D, E, F
526Homo sapiensMutation(s): 0 
Gene Names: LGI1EPTUNQ775/PRO1569
UniProt & NIH Common Fund Data Resources
Find proteins for O95970 (Homo sapiens)
Explore O95970 
Go to UniProtKB:  O95970
PHAROS:  O95970
GTEx:  ENSG00000108231 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO95970
Glycosylation
Glycosylation Sites: 3Go to GlyGen: O95970-1
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAG
Query on NAG

Download Ideal Coordinates CCD File 
AA [auth D]
CA [auth E]
DA [auth E]
EA [auth E]
G [auth A]
AA [auth D],
CA [auth E],
DA [auth E],
EA [auth E],
G [auth A],
GA [auth F],
H [auth A],
HA [auth F],
I [auth A],
IA [auth F],
M [auth B],
N [auth B],
O [auth B],
S [auth C],
T [auth C],
U [auth C],
Y [auth D],
Z [auth D]
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
CA
Query on CA

Download Ideal Coordinates CCD File 
BA [auth D]
FA [auth E]
J [auth A]
JA [auth F]
K [auth A]
BA [auth D],
FA [auth E],
J [auth A],
JA [auth F],
K [auth A],
L [auth A],
P [auth B],
Q [auth B],
R [auth B],
V [auth C],
W [auth C],
X [auth C]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.17 Å
  • R-Value Free: 0.314 
  • R-Value Work: 0.266 
  • R-Value Observed: 0.268 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 373.503α = 90
b = 232.369β = 94.97
c = 80.035γ = 90
Software Package:
Software NamePurpose
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing
PHENIXrefinement

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31270767

Revision History  (Full details and data files)

  • Version 1.0: 2023-12-13
    Type: Initial release
  • Version 1.1: 2024-11-20
    Changes: Structure summary