8HOE | pdb_00008hoe

Apo structure of HopBF1 kinase from Ewingella americana

• PDB DOI: https://doi.org/10.2210/pdb8HOE/pdb

• Classification: TRANSFERASE
• Organism(s): Ewingella americana
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-12-09 Released: 2023-12-20 
• Deposition Author(s): Wang, C.C., Xu, T.
• Funding Organization(s): National Science Foundation (NSF, China)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 
  0.225 (Depositor), 0.209 (DCC) 
• R-Value Work: 
  0.198 (Depositor) 
• R-Value Observed: 
  0.200 (Depositor) 

Starting Model: other

Literature

Apo structure of HopBF1 kinase from Ewingella americana

Wang, C.C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 21.57 kDa 
• Atom Count: 1,430 
• Modeled Residue Count: 175 
• Deposited Residue Count: 189 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Type III effector HopBF1	A	189	Ewingella americana	Mutation(s): 0  Gene Names: GEAM_1328 EC: 2.7.1
UniProt
Find proteins for A0A085GHR3 (Ewingella americana (strain ATCC 33852 / DSM 4580 / CCUG 14506 / JCM 5911 / LMG 7869 / NCTC 12157 / CDC 1468-78)) Explore A0A085GHR3  Go to UniProtKB:  A0A085GHR3

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	G [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
EDO	B [auth A], C [auth A], D [auth A], E [auth A], F [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free:  0.225 (Depositor), 0.209 (DCC) 
• R-Value Work:  0.198 (Depositor) 
• R-Value Observed: 0.200 (Depositor) 

Space Group: H 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 134.283	α = 90
b = 134.283	β = 90
c = 124.163	γ = 120

Software Package:

Software Name	Purpose
PHENIX	model building
PHENIX	refinement
xia2	data scaling
xia2	data reduction
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2023-12-20 
Deposition Author(s): Wang, C.C., Xu, T.

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Funding Organization	Location	Grant Number
National Science Foundation (NSF, China)	China	--

Revision History  

• Version 1.0: 2023-12-20
  Type: Initial release