8HIU

Crystal structure of O-carbamoyltransferase VtdB and the compound VtdB with carbamoyladenylate from Streptomyces sp. NO1W98

• PDB DOI: https://doi.org/10.2210/pdb8HIU/pdb

• Classification: TRANSFERASE
• Organism(s): Streptomyces
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-11-22 Released: 2024-01-24 
• Deposition Author(s): Rao, D., Teng, Y.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.99 Å
• R-Value Free: 0.274 
• R-Value Work: 0.214 

Literature

Crystal structure of O-carbamoyltransferase VtdB and the compound VtdB with carbamoyladenylate from Streptomyces sp. NO1W98

Rao, D., Teng, Y.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: mass spectrometry

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 131.77 kDa 
• Atom Count: 9,416 
• Modelled Residue Count: 1,194 
• Deposited Residue Count: 1,194 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Carbamoyltransferase	A, B	597	Streptomyces	Mutation(s): 0
UniProt
Find proteins for A0A7U3NFH8 (Streptomyces sp) Explore A0A7U3NFH8  Go to UniProtKB:  A0A7U3NFH8

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MG (Subject of Investigation/LOI)	C [auth A], D [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.99 Å
• R-Value Free: 0.274 
• R-Value Work: 0.214 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 64.804	α = 90
b = 216.678	β = 113.389
c = 70.573	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-01-24 
Deposition Author(s): Rao, D., Teng, Y.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	31700650

Revision History  

• Version 1.0: 2024-01-24
  Type: Initial release