8HIA

Structure of transforming growth factor beta induced protein (TGFBIp) G623R fibril


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.90 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Release of frustration drives corneal amyloid disaggregation by brain chaperone.

Low, J.Y.K.Shi, X.Anandalakshmi, V.Neo, D.Peh, G.S.L.Koh, S.K.Zhou, L.Abdul Rahim, M.K.Boo, K.Lee, J.Mohanram, H.Alag, R.Mu, Y.Mehta, J.S.Pervushin, K.

(2023) Commun Biol 6: 348-348

  • DOI: https://doi.org/10.1038/s42003-023-04725-1
  • Primary Citation of Related Structures:  
    8HGA, 8HIA

  • PubMed Abstract: 

    TGFBI-related corneal dystrophy (CD) is characterized by the accumulation of insoluble protein deposits in the corneal tissues, eventually leading to progressive corneal opacity. Here we show that ATP-independent amyloid-β chaperone L-PGDS can effectively disaggregate corneal amyloids in surgically excised human cornea of TGFBI-CD patients and release trapped amyloid hallmark proteins. Since the mechanism of amyloid disassembly by ATP-independent chaperones is unknown, we reconstructed atomic models of the amyloids self-assembled from TGFBIp-derived peptides and their complex with L-PGDS using cryo-EM and NMR. We show that L-PGDS specifically recognizes structurally frustrated regions in the amyloids and releases those frustrations. The released free energy increases the chaperone's binding affinity to amyloids, resulting in local restructuring and breakage of amyloids to protofibrils. Our mechanistic model provides insights into the alternative source of energy utilized by ATP-independent disaggregases and highlights the possibility of using these chaperones as treatment strategies for different types of amyloid-related diseases.


  • Organizational Affiliation

    School of Biological Sciences, Nanyang Technological University, Singapore, 637551, Singapore.


Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transforming growth factor-beta-induced protein ig-h3
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T
23Homo sapiensMutation(s): 1 
Gene Names: TGFBI
UniProt & NIH Common Fund Data Resources
Find proteins for Q15582 (Homo sapiens)
Explore Q15582 
Go to UniProtKB:  Q15582
PHAROS:  Q15582
GTEx:  ENSG00000120708 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ15582
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.90 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Education (MoE, Singapore)SingaporeMOE2019-T3-1-012
Ministry of Education (MoE, Singapore)SingaporeRG28/19

Revision History  (Full details and data files)

  • Version 1.0: 2023-07-26
    Type: Initial release
  • Version 1.1: 2024-02-21
    Changes: Data collection, Data processing, Source and taxonomy