Download MendeleyCrystal Structure of ApiI in complex with SAH
Zhou, J.H., Lu, J.Y.To be published.
8GZI
Crystal Structure of ApiI in complex with SAH
- PDB DOI: https://doi.org/10.2210/pdb8GZI/pdb
- Classification: BIOSYNTHETIC PROTEIN
- Organism(s): Apiospora montagnei NRRL 25634
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2022-09-27 Released: 2023-09-27
- Funding Organization(s): National Natural Science Foundation of China (NSFC)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.12 Å
- R-Value Free: 0.254
- R-Value Work: 0.203
- R-Value Observed: 0.205
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ApiI | 407 | Apiospora montagnei NRRL 25634 | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for A0A9Y2YAB6 (Apiospora montagnei NRRL 25634) Explore A0A9Y2YAB6 Go to UniProtKB: A0A9Y2YAB6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A9Y2YAB6 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SAH (Subject of Investigation/LOI) Query on SAH | B [auth A] | S-ADENOSYL-L-HOMOCYSTEINE C14 H20 N6 O5 S ZJUKTBDSGOFHSH-WFMPWKQPSA-N |  | ||
| GOL Query on GOL | C [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | D [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.12 Å
- R-Value Free: 0.254
- R-Value Work: 0.203
- R-Value Observed: 0.205
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 98.024 | α = 90 |
| b = 98.024 | β = 90 |
| c = 80.257 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| xia2 | data reduction |
| Aimless | data scaling |
| PHENIX | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-09-27 Deposition Author(s): Zhou, J.H., Lu, J.Y.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Foundation of China (NSFC) | China | 91856202 |
Revision History (Full details and data files)
- Version 1.0: 2023-09-27
Type: Initial release
