8GT0

Structure of falcipain and human Stefin A complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.28 Å
  • R-Value Free: 0.299 
  • R-Value Work: 0.278 
  • R-Value Observed: 0.279 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Structure of falcipain and human Stefin A complex

Chakraborty, S.Biswas, S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cysteine protease falcipain-2
A, C, E
241Plasmodium falciparumMutation(s): 0 
EC: 3.4.22
UniProt
Find proteins for Q8I6U4 (Plasmodium falciparum (isolate 3D7))
Explore Q8I6U4 
Go to UniProtKB:  Q8I6U4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8I6U4
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Cystatin-A
B, D
98Homo sapiensMutation(s): 0 
Gene Names: CSTASTF1STFA
UniProt & NIH Common Fund Data Resources
Find proteins for P01040 (Homo sapiens)
Explore P01040 
Go to UniProtKB:  P01040
PHAROS:  P01040
GTEx:  ENSG00000121552 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01040
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 8 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PE8 (Subject of Investigation/LOI)
Query on PE8

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AA [auth A]
BA [auth A]
CA [auth A]
DB [auth B]
DC [auth B]
AA [auth A],
BA [auth A],
CA [auth A],
DB [auth B],
DC [auth B],
KD [auth C],
LD [auth C],
TB [auth B],
UB [auth B],
VB [auth B],
WF [auth E],
XF [auth E],
YF [auth E]
3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL
C16 H34 O9
GLZWNFNQMJAZGY-UHFFFAOYSA-N
PG4 (Subject of Investigation/LOI)
Query on PG4

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AC [auth B]
AE [auth C]
AF [auth D]
BC [auth B]
CB [auth B]
AC [auth B],
AE [auth C],
AF [auth D],
BC [auth B],
CB [auth B],
GA [auth A],
GE [auth D],
GF [auth D],
HA [auth A],
IA [auth A],
JA [auth A],
KA [auth A],
KE [auth D],
LA [auth A],
LF [auth E],
MA [auth A],
ND [auth C],
OD [auth C],
PA [auth A],
PD [auth C],
QA [auth A],
QD [auth C],
VD [auth C],
VE [auth D],
WA [auth A],
WE [auth D],
XB [auth B],
XE [auth D],
YB [auth B],
YE [auth D],
ZB [auth B]
TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
PEG (Subject of Investigation/LOI)
Query on PEG

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CE [auth C]
CF [auth D]
DE [auth C]
ED [auth C]
FD [auth C]
CE [auth C],
CF [auth D],
DE [auth C],
ED [auth C],
FD [auth C],
GD [auth C],
HD [auth C],
ID [auth C],
JD [auth C],
LC [auth B],
NA [auth A],
SB [auth B],
SF [auth E],
TA [auth A],
TD [auth C],
TF [auth E],
UA [auth A],
UE [auth D],
UF [auth E],
VF [auth E],
W [auth A],
X [auth A],
Y [auth A],
Z [auth A]
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
SO4 (Subject of Investigation/LOI)
Query on SO4

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FF [auth D]
RB [auth B]
RE [auth D]
RF [auth E]
SE [auth D]
FF [auth D],
RB [auth B],
RE [auth D],
RF [auth E],
SE [auth D],
TE [auth D],
ZD [auth C]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
GOL (Subject of Investigation/LOI)
Query on GOL

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AB [auth B]
AD [auth C]
BE [auth C]
BF [auth D]
CC [auth B]
AB [auth B],
AD [auth C],
BE [auth C],
BF [auth D],
CC [auth B],
DF [auth D],
EB [auth B],
EC [auth B],
EE [auth C],
F [auth A],
FB [auth B],
FE [auth C],
G [auth A],
GB [auth B],
GC [auth B],
H [auth A],
HB [auth B],
HC [auth B],
I [auth A],
IB [auth B],
IC [auth B],
IE [auth D],
J [auth A],
JB [auth B],
JC [auth B],
K [auth A],
KB [auth B],
KC [auth B],
L [auth A],
LB [auth B],
LE [auth D],
M [auth A],
MB [auth B],
MC [auth B],
ME [auth D],
MF [auth E],
N [auth A],
NB [auth B],
NE [auth D],
NF [auth E],
O [auth A],
OB [auth B],
OE [auth D],
OF [auth E],
P [auth A],
PE [auth D],
Q [auth A],
QC [auth C],
R [auth A],
RC [auth C],
S [auth A],
SA [auth A],
SC [auth C],
TC [auth C],
UC [auth C],
UD [auth C],
VC [auth C],
WC [auth C],
XA [auth A],
XC [auth C],
YA [auth A],
YC [auth C],
ZA [auth B],
ZC [auth C]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
EDO (Subject of Investigation/LOI)
Query on EDO

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BB [auth B]
DA [auth A]
EA [auth A]
FA [auth A]
MD [auth C]
BB [auth B],
DA [auth A],
EA [auth A],
FA [auth A],
MD [auth C],
OA [auth A],
RD [auth C],
SD [auth C],
VA [auth A],
WB [auth B],
XD [auth C]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
CL
Query on CL

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ZE [auth D]CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
NA
Query on NA

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BD [auth C]
CD [auth C]
DD [auth C]
EF [auth D]
FC [auth B]
BD [auth C],
CD [auth C],
DD [auth C],
EF [auth D],
FC [auth B],
HE [auth D],
HF [auth D],
IF [auth D],
JE [auth D],
JF [auth D],
KF [auth D],
NC [auth B],
OC [auth B],
PB [auth B],
PC [auth B],
PF [auth E],
QB [auth B],
QE [auth D],
QF [auth E],
RA [auth A],
T [auth A],
U [auth A],
V [auth A],
WD [auth C],
YD [auth C]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.28 Å
  • R-Value Free: 0.299 
  • R-Value Work: 0.278 
  • R-Value Observed: 0.279 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 65.1α = 90
b = 118.063β = 90
c = 119.34γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other governmentIndia--

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-13
    Type: Initial release