8GQD

Complex Structure of Arginine Kinase McsB and McsA from Staphylococcus aureus


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.41 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Complex structure and activation mechanism of arginine kinase McsB by McsA.

Lu, K.Luo, B.Tao, X.Luo, Y.Ao, M.Zheng, B.Xu, X.Ma, X.Niu, J.Li, H.Xie, Y.Zhao, Z.Zheng, P.Wang, G.Gao, S.Wang, C.Xia, W.Su, Z.Mao, Z.W.

(2024) Nat Chem Biol 

  • DOI: https://doi.org/10.1038/s41589-024-01720-3
  • Primary Citation of Related Structures:  
    8GQD

  • PubMed Abstract: 

    Protein phosphorylation is a pivotal post-translational modification modulating various cellular processes. In Gram-positive bacteria, the protein arginine kinase McsB, along with its activator McsA, has a key role in labeling misfolded and damaged proteins during stress. However, the activation mechanism of McsB by McsA remains elusive. Here we report the cryo-electron microscopy structure of a tetrameric McsA-McsB complex at 3.41 Å resolution. Biochemical analysis indicates that the homotetrameric assembly is essential for McsB's kinase activity. The conserved C-terminal zinc finger of McsA interacts with an extended loop in McsB, optimally orienting a critical catalytic cysteine residue. In addition, McsA binding decreases the CtsR's affinity for McsB, enhancing McsB's kinase activity and accelerating the turnover rate of CtsR phosphorylation. Furthermore, McsA binding also increases McsB's thermostability, ensuring its activity under heat stress. These findings elucidate the structural basis and activation mechanism of McsB in stress response.


  • Organizational Affiliation

    MOE Key Laboratory of Bioinorganic and Synthetic Chemistry, School of Chemistry, IGCME, GBRCE for Functional Molecular Engineering, Sun Yat-Sen University, Guangzhou, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein-arginine kinaseA [auth D],
B [auth A],
C [auth B],
D [auth C]
335Staphylococcus aureusMutation(s): 0 
Gene Names: mcsB
EC: 2.7.14.1
UniProt
Find proteins for Q2G0P6 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
Explore Q2G0P6 
Go to UniProtKB:  Q2G0P6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2G0P6
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Protein-arginine kinase activator protein
E, F, G, H
59Staphylococcus aureusMutation(s): 0 
Gene Names: mcsA
UniProt
Find proteins for Q2G0P7 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
Explore Q2G0P7 
Go to UniProtKB:  Q2G0P7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2G0P7
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.41 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1
MODEL REFINEMENTCoot0.9
MODEL REFINEMENTPHENIX1.15

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China22077142
National Natural Science Foundation of China (NSFC)China22022706
National Natural Science Foundation of China (NSFC)China21837006
National Natural Science Foundation of China (NSFC)China91953117
National Natural Science Foundation of China (NSFC)China21877131
National Natural Science Foundation of China (NSFC)China32070049
National Natural Science Foundation of China (NSFC)China32222040
Ministry of Science and Technology (MoST, China)China2021YFA1301900

Revision History  (Full details and data files)

  • Version 1.0: 2024-03-06
    Type: Initial release
  • Version 1.1: 2024-09-18
    Changes: Data collection, Database references