8GOK

Legionella OTU deubiquitinase LotA OTU1 domain

• PDB DOI: https://doi.org/10.2210/pdb8GOK/pdb

• Classification: HYDROLASE
• Organism(s): Legionella pneumophila
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2022-08-25 Released: 2023-04-19 
• Deposition Author(s): Shin, D., Kang, S.
• Funding Organization(s): National Research Foundation (NRF, Korea)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.52 Å
• R-Value Free: 0.213 
• R-Value Work: 0.195 
• R-Value Observed: 0.196 

Literature

Legionella OTU deubiquitinase LotA OTU1 domain

Shin, D., Kang, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 31.36 kDa 
• Atom Count: 2,559 
• Modelled Residue Count: 273 
• Deposited Residue Count: 273 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Legionella OTU-deubiquitinase A OTU1 domain	A	273	Legionella pneumophila	Mutation(s): 0  Gene Names: lpg2248
UniProt
Find proteins for Q5ZTB4 (Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)) Explore Q5ZTB4  Go to UniProtKB:  Q5ZTB4

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.52 Å
• R-Value Free: 0.213 
• R-Value Work: 0.195 
• R-Value Observed: 0.196 
• Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 86.217	α = 90
b = 86.217	β = 90
c = 91.701	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-04-19 
Deposition Author(s): Shin, D., Kang, S.

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Funding Organization	Location	Grant Number
National Research Foundation (NRF, Korea)	Korea, Republic Of	2021R1C1C100396112
National Research Foundation (NRF, Korea)	Korea, Republic Of	2018R1A6A1A0302560722

Revision History  

• Version 1.0: 2023-04-19
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Refinement description