8GL6 | pdb_00008gl6

The Type 9 Secretion System in vitro assembled, RemA-CTD substrate bound complex

  • Classification: MEMBRANE PROTEIN
  • Organism(s): Flavobacterium johnsoniae
  • Mutation(s): No 

  • Deposited: 2023-03-21 Released: 2024-01-31 
  • Deposition Author(s): Deme, J.C., Lea, S.M.
  • Funding Organization(s): Wellcome Trust, European Research Council (ERC), Biotechnology and Biological Sciences Research Council (BBSRC), Medical Research Council (MRC, United Kingdom), National Institutes of Health/National Cancer Institute (NIH/NCI)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 8GL6

This is version 1.1 of the entry. See complete history. 

Literature

The Type 9 Secretion System caught in the act of transport

Lauber, F., Deme, J.C., Liu, X., Kjaer, A., Miller, H.L., Alcock, F., Lea, S.M., Berks, B.C.

(2024) Nat Microbiol 

Macromolecule Content 

  • Total Structure Weight: 488.77 kDa 
  • Atom Count: 21,896 
  • Modeled Residue Count: 2,762 
  • Deposited Residue Count: 4,417 
  • Unique protein chains: 4

Macromolecules

Find similar proteins by:
|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Protein involved in gliding motility SprA2,403Flavobacterium johnsoniaeMutation(s): 0 
UniProt
Find proteins for A0A1M5G5I4 (Flavobacterium johnsoniae)
Explore A0A1M5G5I4 
Go to UniProtKB:  A0A1M5G5I4
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1M5G5I4
Sequence Annotations
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Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Peptidyl-prolyl cis-trans isomerase176Flavobacterium johnsoniaeMutation(s): 0 
EC: 5.2.1.8
UniProt
Find proteins for A5F9W9 (Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / BCRC 14874 / CCUG 350202 / NBRC 14942 / NCIMB 11054 / UW101))
Explore A5F9W9 
Go to UniProtKB:  A5F9W9
Entity Groups
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UniProt GroupA5F9W9
Sequence Annotations
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Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Type IX secretion system protein PorV domain-containing proteinC [auth F]402Flavobacterium johnsoniaeMutation(s): 0 
UniProt
Find proteins for A5FJM7 (Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / BCRC 14874 / CCUG 350202 / NBRC 14942 / NCIMB 11054 / UW101))
Explore A5FJM7 
Go to UniProtKB:  A5FJM7
Entity Groups
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UniProt GroupA5FJM7
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Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
RemA1,436Flavobacterium johnsoniaeMutation(s): 0 
UniProt
Find proteins for A5FLS4 (Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / BCRC 14874 / CCUG 350202 / NBRC 14942 / NCIMB 11054 / UW101))
Explore A5FLS4 
Go to UniProtKB:  A5FLS4
Entity Groups
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UniProt GroupA5FLS4
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
LMN

Query on LMN


Download:Ideal Coordinates CCD File
E [auth F]Lauryl Maltose Neopentyl Glycol
C47 H88 O22
MADJBYLAYPCCOO-XYPZXBMFSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONRELION3.0

Structure Validation

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View more in-depth experimental data

Entry History 

& Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom219477/Z/19/Z
Wellcome TrustUnited Kingdom107929/Z/15/Z
European Research Council (ERC)European Union833713
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/S007474/1
Medical Research Council (MRC, United Kingdom)United KingdomMR/S021264/1
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesCCR Core Funding for Lea Group

Revision History  (Full details and data files)

  • Version 1.0: 2024-01-31
    Type: Initial release
  • Version 1.1: 2025-05-14
    Changes: Data collection, Structure summary