8GCI | pdb_00008gci

Crystal structure of C. elegans LIN-42 PAS-B domain

PDB DOI: https://doi.org/10.2210/pdb8GCI/pdb

Classification: GENE REGULATION
Organism(s): Caenorhabditis elegans
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-03-01 Released: 2023-03-15
Deposition Author(s): Spangler, B.K., Coronado, A.R., Tripathi, S.M., Ward, J.D., Partch, C.L.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.42 Å
R-Value Free:
0.293 (Depositor), 0.290 (DCC)
R-Value Work:
0.263 (Depositor), 0.270 (DCC)
R-Value Observed:
0.266 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of C. elegans LIN-42 PAS-B domain

Spangler, B.K., Coronado, A.R., Tripathi, S.M., Ward, J.D., Partch, C.L.

To be published.

Macromolecule Content

Total Structure Weight: 31.19 kDa
Atom Count: 1,391
Modeled Residue Count: 169
Deposited Residue Count: 282
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Period protein homolog lin-42	A	282	Caenorhabditis elegans	Mutation(s): 0 Gene Names: lin-42, F47F6.1
UniProt
Find proteins for Q65ZG8 (Caenorhabditis elegans) Explore Q65ZG8 Go to UniProtKB: Q65ZG8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q65ZG8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.42 Å
R-Value Free: 0.293 (Depositor), 0.290 (DCC)
R-Value Work: 0.263 (Depositor), 0.270 (DCC)
R-Value Observed: 0.266 (Depositor)

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.733	α = 90
b = 105.907	β = 90
c = 152.966	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-03-15

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	--

Revision History (Full details and data files)

Version 1.0: 2023-03-15
Type: Initial release
Version 1.1: 2024-05-22
Changes: Data collection

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.