8FZ3 | pdb_00008fz3

Sterile Alpha Motif of Human Translocation ETS Leukemia, Non-Polymer Crystal Form

• PDB DOI: https://doi.org/10.2210/pdb8FZ3/pdb

• Classification: PROTEIN BINDING
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2023-01-27 Released: 2023-03-29 
• Deposition Author(s): Averett, J.C., Nawarathnage, S.D., Moody, J.D.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.78 Å
• R-Value Free: 
  0.267 (Depositor), 0.268 (DCC) 
• R-Value Work: 
  0.229 (Depositor), 0.229 (DCC) 
• R-Value Observed: 
  0.231 (Depositor) 

Starting Model: experimental

Literature

Sterile Alpha Motif of Human Translocation ETS Leukemia, Non-Polymer Crystal Form, With Disordered Human ACK1 UBA Domain Fused to C-terminus

Averett, J.C., Nawarathnage, S.D., Moody, J.D.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors.

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 79.41 kDa 
• Atom Count: 2,484 
• Modeled Residue Count: 312 
• Deposited Residue Count: 680 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcription factor ETV6, Activated CDC42 kinase 1 fusion	A, B, C, D	170	Homo sapiens	Mutation(s): 2  Gene Names: ETV6, TEL, TEL1, TNK2, ACK1 EC: 2.7.10.2 (PDB Primary Data), 2.7.11.1 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for P41212 (Homo sapiens) Explore P41212  Go to UniProtKB:  P41212
PHAROS:  P41212 GTEx:  ENSG00000139083
Find proteins for Q07912 (Homo sapiens) Explore Q07912  Go to UniProtKB:  Q07912
PHAROS:  Q07912 GTEx:  ENSG00000061938
UniProt Groups	P41212Q07912

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PO4	F [auth B]	PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K
CL	E [auth A], G [auth C]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.78 Å
• R-Value Free:  0.267 (Depositor), 0.268 (DCC) 
• R-Value Work:  0.229 (Depositor), 0.229 (DCC) 
• R-Value Observed: 0.231 (Depositor) 

Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.506	α = 90
b = 61.506	β = 90
c = 166.139	γ = 120

Software Package:

Software Name	Purpose
autoPROC	data processing
PHENIX	refinement
Coot	model building
PHASER	phasing
autoPROC	data scaling
autoPROC	data reduction

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2023-03-29 
Deposition Author(s): Averett, J.C., Nawarathnage, S.D., Moody, J.D.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	1R15GM146209-01

Revision History  

• Version 1.0: 2023-03-29
  Type: Initial release
  
• Version 1.1: 2024-05-22
  Changes: Data collection