8FWK | pdb_00008fwk

CryoEM structure of Human ABCB6 Transporter

PDB DOI: https://doi.org/10.2210/pdb8FWK/pdb
EM Map EMD-29511: EMDB EMDataResource

Classification: TRANSPORT PROTEIN
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No
Membrane Protein: Yes OPM PDBTM

Deposited: 2023-01-22 Released: 2023-02-08
Deposition Author(s): Shaik, M.M., Myasnikov, A.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 8FWK

This is version 1.1 of the entry. See complete history.

Literature

CryoEM structure of Human ABCB6 Transporter

Shaik, M.M., Myasnikov, A.

To be published.

Macromolecule Content

Total Structure Weight: 189.94 kDa
Atom Count: 9,462
Modeled Residue Count: 1,194
Deposited Residue Count: 1,700
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP-binding cassette sub-family B member 6	A [auth B], B [auth A]	850	Homo sapiens	Mutation(s): 0 Gene Names: ABCB6, MTABC3, PRP, UMAT EC: 7.6.2.5 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NP58 (Homo sapiens) Explore Q9NP58 Go to UniProtKB: Q9NP58
PHAROS: Q9NP58 GTEx: ENSG00000115657
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9NP58
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	9.03
MODEL REFINEMENT	PHENIX	1.18.2-3874-000

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2023-02-08

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2023-02-08
Type: Initial release
Version 1.1: 2024-06-19
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.