8FNK

Cryo-EM structure of RNase-untreated RESC-B in trypanosomal RNA editing


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Structural basis of gRNA stabilization and mRNA recognition in trypanosomal RNA editing.

Liu, S.Wang, H.Li, X.Zhang, F.Lee, J.K.J.Li, Z.Yu, C.Hu, J.J.Zhao, X.Suematsu, T.Alvarez-Cabrera, A.L.Liu, Q.Zhang, L.Huang, L.Aphasizheva, I.Aphasizhev, R.Zhou, Z.H.

(2023) Science 381: eadg4725-eadg4725

  • DOI: https://doi.org/10.1126/science.adg4725
  • Primary Citation of Related Structures:  
    8FN4, 8FN6, 8FNC, 8FNF, 8FNI, 8FNK

  • PubMed Abstract: 

    In Trypanosoma brucei , the editosome, composed of RNA-editing substrate-binding complex (RESC) and RNA-editing catalytic complex (RECC), orchestrates guide RNA (gRNA)-programmed editing to recode cryptic mitochondrial transcripts into messenger RNAs (mRNAs). The mechanism of information transfer from gRNA to mRNA is unclear owing to a lack of high-resolution structures for these complexes. With cryo-electron microscopy and functional studies, we have captured gRNA-stabilizing RESC-A and gRNA-mRNA-binding RESC-B and RESC-C particles. RESC-A sequesters gRNA termini, thus promoting hairpin formation and blocking mRNA access. The conversion of RESC-A into RESC-B or -C unfolds gRNA and allows mRNA selection. The ensuing gRNA-mRNA duplex protrudes from RESC-B, likely exposing editing sites to RECC-catalyzed cleavage, uridine insertion or deletion, and ligation. Our work reveals a remodeling event facilitating gRNA-mRNA hybridization and assembly of a macromolecular substrate for the editosome's catalytic modality.


  • Organizational Affiliation

    Department of Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles, CA, USA.


Macromolecules

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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
RNA-editing substrate-binding complex protein 5 (RESC5)C [auth 5]402Trypanosoma bruceiMutation(s): 0 
UniProt
Find proteins for Q389F5 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
RNA-editing substrate-binding complex protein 6 (RESC6)D [auth 6]516Trypanosoma bruceiMutation(s): 0 
UniProt
Find proteins for Q57ZX7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
RNA-editing substrate-binding complex protein 7 (RESC7)E [auth 7]174Trypanosoma bruceiMutation(s): 0 
UniProt
Find proteins for Q384B4 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
RNA-editing substrate-binding complex protein 8 (RESC8)F [auth 8]545Trypanosoma bruceiMutation(s): 0 
UniProt
Find proteins for Q389W4 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
RNA-editing substrate-binding complex protein 9 (RESC9)G [auth 9]872Trypanosoma bruceiMutation(s): 0 
UniProt
Find proteins for Q585T1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
RNA-editing substrate-binding complex protein 10 (RESC10)H [auth 10]543Trypanosoma bruceiMutation(s): 0 
UniProt
Find proteins for Q57VS6 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
RNA-editing substrate-binding complex protein 11 (RESC11)I [auth 11]934Trypanosoma bruceiMutation(s): 0 
UniProt
Find proteins for Q57WL2 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
RNA-editing substrate-binding complex protein 13 (RESC13)J [auth 13]320Trypanosoma bruceiMutation(s): 0 
UniProt
Find proteins for Q389P7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
RNA-editing substrate-binding complex protein 14 (RESC14)K [auth 14]366Trypanosoma bruceiMutation(s): 0 
UniProt
Find proteins for Q38EL9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 1
MoleculeChains LengthOrganismImage
mRNAA [auth m]51Trypanosoma brucei
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Entity ID: 2
MoleculeChains LengthOrganismImage
gRNAB [auth g]43Trypanosoma brucei
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesRO1AI101057
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesR01AI152408
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM071940

Revision History  (Full details and data files)

  • Version 1.0: 2023-07-19
    Type: Initial release