8FK2

The N-terminal VicR from Streptococcus mutans


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.205 

Starting Model: other
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wwPDB Validation   3D Report Full Report


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Literature

Small Molecule Attenuates Bacterial Virulence by Targeting Conserved Response Regulator.

Liu, C.Zhang, H.Peng, X.Blackledge, M.S.Furlani, R.E.Li, H.Su, Z.Melander, R.J.Melander, C.Michalek, S.Wu, H.

(2023) mBio 14: e0013723-e0013723

  • DOI: https://doi.org/10.1128/mbio.00137-23
  • Primary Citation of Related Structures:  
    8FK2

  • PubMed Abstract: 

    Antibiotic tolerance within a biofilm community presents a serious public health challenge. Here, we report the identification of a 2-aminoimidazole derivative that inhibits biofilm formation by two pathogenic Gram-positive bacteria, Streptococcus mutans and Staphylococcus aureus. In S. mutans, the compound binds to VicR, a key response regulator, at the N-terminal receiver domain, and concurrently inhibits expression of vicR and VicR-regulated genes, including the genes that encode the key biofilm matrix producing enzymes, Gtfs. The compound inhibits S. aureus biofilm formation via binding to a Staphylococcal VicR homolog. In addition, the inhibitor effectively attenuates S. mutans virulence in a rat model of dental caries. As the compound targets bacterial biofilms and virulence through a conserved transcriptional factor, it represents a promising new class of anti-infective agents that can be explored to prevent or treat a host of bacterial infections. IMPORTANCE Antibiotic resistance is a major public health issue due to the growing lack of effective anti-infective therapeutics. New alternatives to treat and prevent biofilm-driven microbial infections, which exhibit high tolerance to clinically available antibiotics, are urgently needed. We report the identification of a small molecule that inhibits biofilm formation by two important pathogenic Gram-positive bacteria, Streptococcus mutans and Staphylococcus aureus. The small molecule selectively targets a transcriptional regulator leading to attenuation of a biofilm regulatory cascade and concurrent reduction of bacterial virulence in vivo . As the regulator is highly conserved, the finding has broad implication for the development of antivirulence therapeutics that selectively target biofilms.


  • Organizational Affiliation

    Department of Pediatric Dentistry, University of Alabama at Birmingham Schools of Dentistry and Medicine, Birmingham, Alabama, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Putative response regulator CovR VicR-like protein
A, B
121Streptococcus mutans UA159Mutation(s): 0 
Gene Names: covRSMU_1517
UniProt
Find proteins for I6L8Z5 (Streptococcus mutans serotype c (strain ATCC 700610 / UA159))
Explore I6L8Z5 
Go to UniProtKB:  I6L8Z5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupI6L8Z5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.205 
  • Space Group: P 65
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 53.032α = 90
b = 53.032β = 90
c = 196.29γ = 120
Software Package:
Software NamePurpose
PHENIXphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Dental and Craniofacial Research (NIH/NIDCR)United States5R01DE022350-10

Revision History  (Full details and data files)

  • Version 1.0: 2023-10-25
    Type: Initial release