Download MendeleyCrystal Structure of HLA-B*57:01-TW10-T242N complex
Chatzileontiadou, D.S.M., Lobos, C.A., Gras, S.To be published.
8F7M
Crystal Structure of HLA-B*57:01-TW10-T242N complex
- PDB DOI: https://doi.org/10.2210/pdb8F7M/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens, HIV-1 06TG.HT008
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2022-11-18 Released: 2024-06-05
- Funding Organization(s): National Health and Medical Research Council (NHMRC, Australia)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.88 Å
- R-Value Free: 0.220
- R-Value Work: 0.172
- R-Value Observed: 0.174
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| heavy chain HLA-B*57:01 | 278 | Homo sapiens | Mutation(s): 0 Gene Names: HLA-B |  | |
UniProt | |||||
Find proteins for U6BR87 (Homo sapiens) Explore U6BR87 Go to UniProtKB: U6BR87 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | U6BR87 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-2-microglobulin | 99 | Homo sapiens | Mutation(s): 0 Gene Names: B2M, CDABP0092, HDCMA22P |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P61769 (Homo sapiens) Explore P61769 Go to UniProtKB: P61769 | |||||
PHAROS: P61769 GTEx: ENSG00000166710 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P61769 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| T242N peptide (TW10 mutant) | 10 | HIV-1 06TG.HT008 | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P04585 (Human immunodeficiency virus type 1 group M subtype B (isolate HXB2)) Explore P04585 Go to UniProtKB: P04585 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P04585 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PEG Query on PEG | D [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | E [auth A], F [auth B] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.88 Å
- R-Value Free: 0.220
- R-Value Work: 0.172
- R-Value Observed: 0.174
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 50.942 | α = 90 |
| b = 82.174 | β = 90 |
| c = 110.833 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| Aimless | data scaling |
| XDS | data reduction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-06-05 Deposition Author(s): Chatzileontiadou, D.S.M., Lobos, C.A., Gras, S.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Health and Medical Research Council (NHMRC, Australia) | Australia | -- |
Revision History (Full details and data files)
- Version 1.0: 2024-06-05
Type: Initial release - Version 1.1: 2024-10-23
Changes: Structure summary
