8F5O

Structure of Leishmania tarentolae IFT-A (state 1)

  • Classification: PROTEIN TRANSPORT
  • Organism(s): Leishmania tarentolae
  • Mutation(s): No 

  • Deposited: 2022-11-14 Released: 2022-12-21 
  • Deposition Author(s): Zhou, H., Brown, A.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Mechanism of IFT-A polymerization into trains for ciliary transport.

Meleppattu, S.Zhou, H.Dai, J.Gui, M.Brown, A.

(2022) Cell 185: 4986

  • DOI: https://doi.org/10.1016/j.cell.2022.11.033
  • Primary Citation of Related Structures:  
    8F5O, 8F5P

  • PubMed Abstract: 

    Intraflagellar transport (IFT) is the highly conserved process by which proteins are transported along ciliary microtubules by a train-like polymeric assembly of IFT-A and IFT-B complexes. IFT-A is sandwiched between IFT-B and the ciliary membrane, consistent with its putative role in transporting transmembrane and membrane-associated cargoes. Here, we have used single-particle analysis electron cryomicroscopy (cryo-EM) to determine structures of native IFT-A complexes. We show that subcomplex rearrangements enable IFT-A to polymerize laterally on anterograde IFT trains, revealing a cooperative assembly mechanism. Surprisingly, we discover that binding of IFT-A to IFT-B shields the preferred lipid-binding interface from the ciliary membrane but orients an interconnected network of β-propeller domains with the capacity to accommodate diverse cargoes toward the ciliary membrane. This work provides a mechanistic basis for understanding IFT-train assembly and cargo interactions.


  • Organizational Affiliation

    Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, 240 Longwood Avenue, Boston, MA 02115, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 122B, putativeA [auth B]1,247Leishmania tarentolaeMutation(s): 0 
UniProt
Find proteins for A0A640KAU8 (Leishmania tarentolae)
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UniProt GroupA0A640KAU8
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 122 homologB [auth C]1,292Leishmania tarentolaeMutation(s): 0 
UniProt
Find proteins for A0A640KU89 (Leishmania tarentolae)
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UniProt GroupA0A640KU89
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
WD_REPEATS_REGION domain-containing proteinC [auth E]1,654Leishmania tarentolaeMutation(s): 0 
UniProt
Find proteins for A0A640KQ11 (Leishmania tarentolae)
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UniProt GroupA0A640KQ11
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
NET domain-containing proteinD [auth A]368Leishmania tarentolaeMutation(s): 0 
UniProt
Find proteins for A0A640KKJ7 (Leishmania tarentolae)
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UniProt GroupA0A640KKJ7
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
WD_REPEATS_REGION domain-containing proteinE [auth F]1,376Leishmania tarentolaeMutation(s): 0 
UniProt
Find proteins for A0A640KHB7 (Leishmania tarentolae)
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UniProt GroupA0A640KHB7
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
TPR_REGION domain-containing proteinF [auth D]1,642Leishmania tarentolaeMutation(s): 0 
UniProt
Find proteins for A0A640K949 (Leishmania tarentolae)
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UniProt GroupA0A640K949
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION4.0
MODEL REFINEMENTPHENIX1.18.2-3874

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM141109
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM143183

Revision History  (Full details and data files)

  • Version 1.0: 2022-12-21
    Type: Initial release
  • Version 1.1: 2023-01-11
    Changes: Database references