Download MendeleyAntibody Fab directed against SARS-CoV-2 Spike Protein Receptor Binding Domain (RBD)
Chen, J.C.-H.To be published.
8F2V
Antibody Fab directed against SARS-CoV-2 Spike Protein Receptor Binding Domain (RBD)
- PDB DOI: https://doi.org/10.2210/pdb8F2V/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens
- Expression System: Homo sapiens
- Mutation(s): No
- Deposited: 2022-11-08 Released: 2023-12-13
- Funding Organization(s): Department of Energy (DOE, United States)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.50 Å
- R-Value Free: 0.289
- R-Value Work: 0.246
- R-Value Observed: 0.249
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Fab light chain | A [auth C], C [auth A], E | 214 | Homo sapiens | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Fab heavy chain | B [auth D], D [auth B], F | 223 | Homo sapiens | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MES Query on MES | G [auth C], H [auth A], I [auth F] | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID C6 H13 N O4 S SXGZJKUKBWWHRA-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.50 Å
- R-Value Free: 0.289
- R-Value Work: 0.246
- R-Value Observed: 0.249
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 110.011 | α = 90 |
| b = 184.182 | β = 90 |
| c = 181.064 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHENIX | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-12-13 Deposition Author(s): Chen, J.C.-H.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Department of Energy (DOE, United States) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-12-13
Type: Initial release - Version 1.1: 2024-11-06
Changes: Structure summary
