8ESI | pdb_00008esi

Bile Salt Hydrolase from B. longum with covalent inhibitor bound

PDB DOI: https://doi.org/10.2210/pdb8ESI/pdb

Classification: HYDROLASE/HYDROLASE INHIBITOR
Organism(s): Bifidobacterium longum
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-10-14 Released: 2023-11-01
Deposition Author(s): Walker, M.E., Lim, L., Redinbo, M.R.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.35 Å
R-Value Free:
0.244 (Depositor), 0.249 (DCC)
R-Value Work:
0.210 (Depositor), 0.210 (DCC)
R-Value Observed:
0.210 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

Structural diversity of bile salt hydrolases reveals rationale for substrate selectivity

Walker, M.E., Lim, L., Redinbo, M.R.

To be published.

Macromolecule Content

Total Structure Weight: 285.27 kDa
Atom Count: 19,535
Modeled Residue Count: 2,522
Deposited Residue Count: 2,536
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Conjugated bile acid hydrolase	A, B, C, D, E A, B, C, D, E, F, G, H	317	Bifidobacterium longum	Mutation(s): 0 Gene Names: bsh EC: 3.5.1 (PDB Primary Data), 3.5.1.74 (PDB Primary Data), 3.5.1.24 (PDB Primary Data), 2.3.1 (UniProt)
UniProt
Find proteins for Q9KK62 (Bifidobacterium longum) Explore Q9KK62 Go to UniProtKB: Q9KK62
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9KK62
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
WSR (Subject of Investigation/LOI) Query on WSR Download:Ideal Coordinates CCD File SDF format, chain P [auth H] SDF format, chain O [auth G] SDF format, chain N [auth F] SDF format, chain M [auth E] SDF format, chain L [auth D] SDF format, chain K [auth C] SDF format, chain J [auth B] SDF format, chain I [auth A] MOL2 format, chain P [auth H] MOL2 format, chain O [auth G] MOL2 format, chain N [auth F] MOL2 format, chain M [auth E] MOL2 format, chain L [auth D] MOL2 format, chain K [auth C] MOL2 format, chain J [auth B] MOL2 format, chain I [auth A] mmCIF format, chain P [auth H] mmCIF format, chain O [auth G] mmCIF format, chain N [auth F] mmCIF format, chain M [auth E] mmCIF format, chain L [auth D] mmCIF format, chain K [auth C] mmCIF format, chain J [auth B] mmCIF format, chain I [auth A]	I [auth A] J [auth B] K [auth C] L [auth D] M [auth E] I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	(1R,3aS,3bR,5aR,7R,9aS,9bS,11aR)-1-[(2R)-6-fluoro-5-oxohexan-2-yl]-9a,11a-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-7-yl hydrogen sulfate (non-preferred name) C₂₅ H₄₁ F O₅ S MVPISWRWXKQVBV-CIQXVCGBSA-N		Interactions Focus chain I [auth A] Focus chain J [auth B] Focus chain K [auth C] Focus chain L [auth D] Focus chain M [auth E] Focus chain N [auth F] Focus chain O [auth G] Focus chain P [auth H] Interactions & Density Focus chain I [auth A] Focus chain J [auth B] Focus chain K [auth C] Focus chain L [auth D] Focus chain M [auth E] Focus chain N [auth F] Focus chain O [auth G] Focus chain P [auth H]