8EKR

Apo rat TRPV2 in nanodiscs, state 3


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Functional and structural insights into activation of TRPV2 by weak acids.

Haug, F.M.Pumroy, R.A.Sridhar, A.Pantke, S.Dimek, F.Fricke, T.C.Hage, A.Herzog, C.Echtermeyer, F.G.de la Roche, J.Koh, A.Kotecha, A.Howard, R.J.Lindahl, E.Moiseenkova-Bell, V.Leffler, A.

(2024) EMBO J 43: 2264-2290

  • DOI: https://doi.org/10.1038/s44318-024-00106-4
  • Primary Citation of Related Structures:  
    8EKP, 8EKQ, 8EKR, 8EKS

  • PubMed Abstract: 

    Transient receptor potential (TRP) ion channels are involved in the surveillance or regulation of the acid-base balance. Here, we demonstrate that weak carbonic acids, including acetic acid, lactic acid, and CO 2 activate and sensitize TRPV2 through a mechanism requiring permeation through the cell membrane. TRPV2 channels in cell-free inside-out patches maintain weak acid-sensitivity, but protons applied on either side of the membrane do not induce channel activation or sensitization. The involvement of proton modulation sites for weak acid-sensitivity was supported by the identification of titratable extracellular (Glu495, Glu561) and intracellular (His521) residues on a cryo-EM structure of rat TRPV2 (rTRPV2) treated with acetic acid. Molecular dynamics simulations as well as patch clamp experiments on mutant rTRPV2 constructs confirmed that these residues are critical for weak acid-sensitivity. We also demonstrate that the pore residue Glu609 dictates an inhibition of weak acid-induced currents by extracellular calcium. Finally, TRPV2-expression in HEK293 cells is associated with an increased weak acid-induced cytotoxicity. Together, our data provide new insights into weak acids as endogenous modulators of TRPV2.


  • Organizational Affiliation

    Department of Anesthesiology and Intensive Care Medicine, Hannover Medical School, 30625, Hannover, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transient receptor potential cation channel subfamily V member 2
A, B, C, D
761Rattus norvegicusMutation(s): 0 
Gene Names: Trpv2Sac2bVrl1
Membrane Entity: Yes 
UniProt
Find proteins for Q9WUD2 (Rattus norvegicus)
Explore Q9WUD2 
Go to UniProtKB:  Q9WUD2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9WUD2
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM103899
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM129357

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-27
    Type: Initial release
  • Version 1.1: 2024-05-08
    Changes: Data collection, Database references, Structure summary
  • Version 1.2: 2024-06-19
    Changes: Database references