Calcium-mediated Pore Formation of Clostridioides difficile Binary Toxin
Abeyawardhane, D.L., Adipietro, K.A., Ruiz, R.G., Varney, K.M., Rustandi, R.R., Silin, V.I., Pozharski, E., Weber, D.J.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
ADP-ribosyltransferase binding component | 667 | Clostridioides difficile R20291 | Mutation(s): 0  Gene Names: cdtB | ![]() | |
UniProt | |||||
Find proteins for A0A9R0BM17 (Clostridioides difficile (strain R20291)) Explore A0A9R0BM17  Go to UniProtKB:  A0A9R0BM17 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A9R0BM17 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CA (Subject of Investigation/LOI) Query on CA | H [auth A] I [auth A] J [auth B] K [auth B] L [auth C] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Task | Software Package | Version |
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MODEL REFINEMENT | Coot | |
MODEL REFINEMENT | PHENIX | |
RECONSTRUCTION | cryoSPARC | 3.3.2 |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | R56AI152397 |