8E1O | pdb_00008e1o

Crystal structure of hTEAD2 bound to a methoxypyridine lipid pocket binder

• PDB DOI: https://doi.org/10.2210/pdb8E1O/pdb

• Classification: TRANSCRIPTION/INHIBITOR
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-08-10 Released: 2023-08-16 
• Deposition Author(s): Noland, C.L., Dey, A., Zbieg, J., Crawford, J.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.25 Å
• R-Value Free: 
  0.247 (Depositor), 0.244 (DCC) 
• R-Value Work: 
  0.200 (Depositor), 0.205 (DCC) 
• R-Value Observed: 
  0.203 (Depositor) 

Starting Model: experimental

Literature

Targeting the Hippo pathway in cancers via ubiquitination dependent TEAD degradation

Pham, T., Pahuja, K., Hagenbeek, T., Zbieg, Z., Noland, C.L., Pham, V.C., Yao, X., Rose, C., Browder, K., Lee, H.J., Yu, M., Chu, M.L., Martin, S., Verschueren, E., Li, J., Kubala, M., Fong, R., Lorenzo, M., Beroza, P., Hsu, P., Paul, S., Villemure, E., Lee, W., Cheung, T., Clausen, S., Lacap, J., Liang, Y., Schmidt, S., Modrusan, Z., Cohen, M., Crawford, J., Jasper, H., Ashworth, A., Lill, J.R., Malek, S., Rudolph, J., Wertz, I., Chang, M., Ye, X., Dey, A.

(2024) bioRxiv 

• DOI: https://doi.org/10.1101/2023.10.03.560675

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 58.13 kDa 
• Atom Count: 3,275 
• Modeled Residue Count: 399 
• Deposited Residue Count: 500 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcriptional enhancer factor TEF-4	A, B	250	Homo sapiens	Mutation(s): 0  Gene Names: TEAD2, TEF4
UniProt & NIH Common Fund Data Resources
Find proteins for Q15562 (Homo sapiens) Explore Q15562  Go to UniProtKB:  Q15562
PHAROS:  Q15562 GTEx:  ENSG00000074219

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
Y2S (Subject of Investigation/LOI)	D [auth A], E [auth B]	5-methoxy-N-({3-[2-(methylamino)-2-oxoethyl]phenyl}methyl)-4-{(E)-2-[trans-4-(trifluoromethyl)cyclohexyl]ethenyl}pyridine-2-carboxamide C26 H30 F3 N3 O3 YBEYBRFOUHYJAL-ZDXIVYMOSA-N
TRS	C [auth A]	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.25 Å
• R-Value Free:  0.247 (Depositor), 0.244 (DCC) 
• R-Value Work:  0.200 (Depositor), 0.205 (DCC) 
• R-Value Observed: 0.203 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 122.15	α = 90
b = 62.069	β = 117.41
c = 79.856	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
PHASER	phasing
PDB_EXTRACT	data extraction
STARANISO	data scaling

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2023-08-16 
Deposition Author(s): Noland, C.L., Dey, A., Zbieg, J., Crawford, J.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2023-08-16
  Type: Initial release
  
• Version 1.1: 2024-02-28
  Changes: Database references
• Version 1.2: 2026-03-04
  Changes: Refinement description, Structure summary