Protic and Aprotic Interactions Systematically Perturbed and Mapped via MD and IR Spectroscopy
Kirsh, J.M., Kozuch, J., Weaver, J.B., Boxer, S.G.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photoactive yellow protein | 125 | Halorhodospira halophila | Mutation(s): 1  Gene Names: pyp | ![]() | |
UniProt | |||||
Find proteins for P16113 (Halorhodospira halophila) Explore P16113  Go to UniProtKB:  P16113 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P16113 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
HC4 Query on HC4 | B [auth A] | 4'-HYDROXYCINNAMIC ACID C9 H8 O3 NGSWKAQJJWESNS-ZZXKWVIFSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 66.305 | α = 90 |
b = 66.305 | β = 90 |
c = 40.692 | γ = 120 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XSCALE | data scaling |
PDB_EXTRACT | data extraction |
XDS | data reduction |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | 2R35GM11804406 |
National Science Foundation (NSF, United States) | United States | 1915727 |