8DH7 | pdb_00008dh7

Cryo-EM structure of Saccharomyces cerevisiae Succinyl-CoA:acetate CoA-transferase (Ach1p)

PDB DOI: https://doi.org/10.2210/pdb8DH7/pdb
EM Map EMD-27431: EMDB EMDataResource

Classification: TRANSFERASE
Organism(s): Saccharomyces cerevisiae
Mutation(s): No

Deposited: 2022-06-25 Released: 2022-07-20
Deposition Author(s): Godoy, A.S., Song, Y., Cheruvara, H., Quigley, A., Oliva, G.
Funding Organization(s): Sao Paulo Research Foundation (FAPESP)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 8DH7

This is version 1.2 of the entry. See complete history.

Literature

Cryo-EM structure of Saccharomyces cerevisiae cytochrome c oxidase (Complex IV) extracted in lipid nanodiscs

Godoy, A.S., Song, Y., Cheruvara, H., Quigley, A., Oliva, G.

To be published.

Macromolecule Content

Total Structure Weight: 117.58 kDa
Atom Count: 8,274
Modeled Residue Count: 1,052
Deposited Residue Count: 1,052
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acetyl-CoA hydrolase	A [auth B], B [auth A]	526	Saccharomyces cerevisiae	Mutation(s): 0 EC: 3.1.2.1
UniProt
Find proteins for P32316 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P32316 Go to UniProtKB: P32316
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P32316
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.99 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2022-07-20

Deposition Author(s):

Funding Organization	Location	Grant Number
Sao Paulo Research Foundation (FAPESP)	Brazil	2013/07600-3

Revision History (Full details and data files)

Version 1.0: 2022-07-20
Type: Initial release
Version 1.1: 2024-02-14
Changes: Data collection
Version 1.2: 2025-05-21
Changes: Data collection, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.