8CYS | pdb_00008cys

CryoEM structures of amplified alpha-synuclein fibril class B type II with extended core from DLB case I

• PDB DOI: https://doi.org/10.2210/pdb8CYS/pdb
• EM Map EMD-27083: EMDB EMDataResource

• Classification: PROTEIN FIBRIL
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2022-05-24 Released: 2023-05-31 
• Deposition Author(s): Zhou, Y., Sokratian, A., Xu, E., Viverette, E., Dillard, L., Yuan, Y., Li, J.Y., Matarangas, A., Bouvette, J., Borgnia, M., Bartesaghi, A., West, A.
• Funding Organization(s): Michael J. Fox Foundation

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.10 Å
• Aggregation State: FILAMENT 
• Reconstruction Method: HELICAL 

Literature

Structural and functional landscape of alpha-synuclein fibril assemblies amplified from cerebrospinal fluid

Zhou, Y., Sokratian, A., Xu, E., Viverette, E., Dillard, L., Yuan, Y., Li, J.Y., Matarangas, A., Bouvette, J., Borgnia, M., Bartesaghi, A., West, A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 14-mer - A14 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: assay for oligomerization

Macromolecule Content 

• Total Structure Weight: 202.67 kDa 
• Atom Count: 6,958 
• Modeled Residue Count: 1,008 
• Deposited Residue Count: 1,960 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alpha-synuclein	A, B [auth L], C [auth I], D [auth B], E [auth J], F [auth C], G [auth K], H [auth D], I [auth E], J [auth M], K [auth F], L [auth N], M [auth G], N [auth O]	140	Homo sapiens	Mutation(s): 0  Gene Names: SNCA, NACP, PARK1
UniProt & NIH Common Fund Data Resources
Find proteins for P37840 (Homo sapiens) Explore P37840  Go to UniProtKB:  P37840
PHAROS:  P37840 GTEx:  ENSG00000145335

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.10 Å
• Aggregation State: FILAMENT 
• Reconstruction Method: HELICAL 

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2023-05-31 
Deposition Author(s): Zhou, Y., Sokratian, A., Xu, E., Viverette, E., Dillard, L., Yuan, Y., Li, J.Y., Matarangas, A., Bouvette, J., Borgnia, M., Bartesaghi, A., West, A.

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Funding Organization	Location	Grant Number
Michael J. Fox Foundation	United States	--

Revision History  

• Version 1.0: 2023-05-31
  Type: Initial release
  
• Version 1.1: 2024-06-12
  Changes: Data collection