Crystal Structure of dTDP-4-dehydrorhamnose reductase from Klebsiella pneumoniae with bound NADP
Bolejack, M.J., Abendroth, J., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
dTDP-4-dehydrorhamnose reductase | 304 | Klebsiella pneumoniae | Mutation(s): 0  Gene Names:  rmlD, rfbD, rfbD_1, rfbD_2, A7B01_07910, C3F39_24350, DM23092/04_00022, GNE24_11460, SAMEA3649733_05275, SAMEA3727643_01606... EC: 1.1.1.133 | ||
UniProt | |||||
Find proteins for C9K1F1 (Klebsiella pneumoniae) Explore C9K1F1  Go to UniProtKB:  C9K1F1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C9K1F1 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAP (Subject of Investigation/LOI) Query on NAP | E [auth A], J [auth B], N [auth C], Q [auth D] | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H28 N7 O17 P3 XJLXINKUBYWONI-NNYOXOHSSA-N | |||
GOL Query on GOL | G [auth A], I [auth B], P [auth C], S [auth D] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
ACT Query on ACT | F [auth A], K [auth B], O [auth C], R [auth D] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | |||
NA Query on NA | H [auth A], L [auth B], M [auth B], T [auth D] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 71.55 | α = 89.96 |
b = 71.69 | β = 66.58 |
c = 81.23 | γ = 83.08 |
Software Name | Purpose |
---|---|
XDS | data reduction |
XSCALE | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
MoRDa | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | -- |