Engineered imaging scaffolds for cryo-EM of small proteins of interest.
Moche, M., Nygren, P.A., Nilvebrant, J.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Putrescine aminotransferase,Immunoglobulin G-binding protein A | 501 | Escherichia coli, Staphylococcus aureus This entity is chimeric | Mutation(s): 0  Gene Names: patA, ygjG, b3073, JW5510, spa EC: 2.6.1.82 (PDB Primary Data), 2.6.1.29 (PDB Primary Data) | ![]() | |
UniProt | |||||
Find proteins for P38507 (Staphylococcus aureus) Explore P38507  Go to UniProtKB:  P38507 | |||||
Find proteins for P42588 (Escherichia coli (strain K12)) Explore P42588  Go to UniProtKB:  P42588 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Groups | P38507P42588 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PLP Query on PLP | E [auth A], F [auth B], G [auth C], H [auth D] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 73.453 | α = 90 |
b = 173.903 | β = 90 |
c = 209.108 | γ = 90 |
Software Name | Purpose |
---|---|
BUSTER | refinement |
STARANISO | data scaling |
XDS | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Clas Groschinsky Memorial Fund | Sweden | M19380 |
Sven and Dagmar Salens Foundation | Sweden | -- |