Structural atlas of the most abundant human gut virus
Bayfield, O.W., Shkoporov, A.N., Yutin, N., Khokhlova, E.V., Smith, J.L.R., Hawkins, D.E.D.P., Koonin, E.V., Hill, C., Antson, A.A.(null) Nature
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
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(null) Nature
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Auxiliary capsid protein gp36 | 333 | Bacteroides phage crAss001 | Mutation(s): 0 | ||
UniProt | |||||
Find proteins for A0A385DVS7 (Bacteroides phage crAss001) Explore A0A385DVS7 Go to UniProtKB: A0A385DVS7 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A385DVS7 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Head fiber dimer protein gp29 | QS [auth A511] | 24 | Bacteroides phage crAss001 | Mutation(s): 0 | |
UniProt | |||||
Find proteins for A0A385DVL5 (Bacteroides phage crAss001) Explore A0A385DVL5 Go to UniProtKB: A0A385DVL5 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A385DVL5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Head fiber dimer protein gp29 | 122 | Bacteroides phage crAss001 | Mutation(s): 0 | ||
UniProt | |||||
Find proteins for A0A385DTC5 (Bacteroides phage crAss001) Explore A0A385DTC5 Go to UniProtKB: A0A385DTC5 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A385DTC5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Head fiber trimer protein gp21 | 97 | Bacteroides phage crAss001 | Mutation(s): 0 | ||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Muzzle bound helix | 14 | Bacteroides phage crAss001 | Mutation(s): 0 | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Major capsid protein gp32 | 504 | Bacteroides phage crAss001 | Mutation(s): 0 | ||
UniProt | |||||
Find proteins for A0A385DVU6 (Bacteroides phage crAss001) Explore A0A385DVU6 Go to UniProtKB: A0A385DVU6 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A385DVU6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Muzzle protein gp44 | 1,371 | Bacteroides phage crAss001 | Mutation(s): 0 | ||
UniProt | |||||
Find proteins for A0A385DVD6 (Bacteroides phage crAss001) Explore A0A385DVD6 Go to UniProtKB: A0A385DVD6 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A385DVD6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cargo protein 1 gp45 | 842 | Bacteroides phage crAss001 | Mutation(s): 0 | ||
UniProt | |||||
Find proteins for A0A385DV85 (Bacteroides phage crAss001) Explore A0A385DV85 Go to UniProtKB: A0A385DV85 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A385DV85 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Portal protein gp20 | 806 | Bacteroides phage crAss001 | Mutation(s): 0 | ||
UniProt | |||||
Find proteins for A0A385DT68 (Bacteroides phage crAss001) Explore A0A385DT68 Go to UniProtKB: A0A385DT68 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A385DT68 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Portal vertex capsid protein gp57 | 104 | Bacteroides phage crAss001 | Mutation(s): 0 | ||
UniProt | |||||
Find proteins for A0A385DTA3 (Bacteroides phage crAss001) Explore A0A385DTA3 Go to UniProtKB: A0A385DTA3 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A385DTA3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ring protein 1 gp43 | 236 | Bacteroides phage crAss001 | Mutation(s): 0 | ||
UniProt | |||||
Find proteins for A0A385DT91 (Bacteroides phage crAss001) Explore A0A385DT91 Go to UniProtKB: A0A385DT91 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A385DT91 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ring protein 2 gp40 | 225 | Bacteroides phage crAss001 | Mutation(s): 0 | ||
UniProt | |||||
Find proteins for A0A385DT87 (Bacteroides phage crAss001) Explore A0A385DT87 Go to UniProtKB: A0A385DT87 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A385DT87 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 13 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ring protein 3 gp35 | 230 | Bacteroides phage crAss001 | Mutation(s): 0 | ||
UniProt | |||||
Find proteins for A0A385DV73 (Bacteroides phage crAss001) Explore A0A385DV73 Go to UniProtKB: A0A385DV73 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A385DV73 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 14 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ring protein 4/5 gp34 | 238 | Bacteroides phage crAss001 | Mutation(s): 0 | ||
UniProt | |||||
Find proteins for A0A385DVC3 (Bacteroides phage crAss001) Explore A0A385DVC3 Go to UniProtKB: A0A385DVC3 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A385DVC3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 15 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Tail fiber protein gp22 | 832 | Bacteroides phage crAss001 | Mutation(s): 0 | ||
UniProt | |||||
Find proteins for A0A385DVT1 (Bacteroides phage crAss001) Explore A0A385DVT1 Go to UniProtKB: A0A385DVT1 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A385DVT1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 16 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Tail hub protein A gp38 | 215 | Bacteroides phage crAss001 | Mutation(s): 0 | ||
UniProt | |||||
Find proteins for A0A385DTH1 (Bacteroides phage crAss001) Explore A0A385DTH1 Go to UniProtKB: A0A385DTH1 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A385DTH1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 17 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Tail hub protein B gp39 | 114 | Bacteroides phage crAss001 | Mutation(s): 0 | ||
UniProt | |||||
Find proteins for A0A385DVM6 (Bacteroides phage crAss001) Explore A0A385DVM6 Go to UniProtKB: A0A385DVM6 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A385DVM6 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MG Query on MG | ADB [auth E120] AEB [auth E354] AFB [auth E508] BDB [auth E129] BEB [auth E363] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Currently 8CKB does not have a validation slider image.
Funding Organization | Location | Grant Number |
---|---|---|
Wellcome Trust | United Kingdom | 206377 |