8CKB

Asymmetric reconstruction of the crAss001 virion


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.39 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report

Currently 8CKB does not have a validation slider image.


This is version 3.1 of the entry. See complete history


Literature

Structural atlas of the most abundant human gut virus

Bayfield, O.W.Shkoporov, A.N.Yutin, N.Khokhlova, E.V.Smith, J.L.R.Hawkins, D.E.D.P.Koonin, E.V.Hill, C.Antson, A.A.

(null) Nature 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Auxiliary capsid protein gp36333Bacteroides phage crAss001Mutation(s): 0 
UniProt
Find proteins for A0A385DVS7 (Bacteroides phage crAss001)
Explore A0A385DVS7 
Go to UniProtKB:  A0A385DVS7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A385DVS7
Sequence Annotations
Expand
  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Head fiber dimer protein gp29QS [auth A511]24Bacteroides phage crAss001Mutation(s): 0 
UniProt
Find proteins for A0A385DVL5 (Bacteroides phage crAss001)
Explore A0A385DVL5 
Go to UniProtKB:  A0A385DVL5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A385DVL5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Head fiber dimer protein gp29122Bacteroides phage crAss001Mutation(s): 0 
UniProt
Find proteins for A0A385DTC5 (Bacteroides phage crAss001)
Explore A0A385DTC5 
Go to UniProtKB:  A0A385DTC5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A385DTC5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Head fiber trimer protein gp2197Bacteroides phage crAss001Mutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Muzzle bound helix14Bacteroides phage crAss001Mutation(s): 0 
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Major capsid protein gp32504Bacteroides phage crAss001Mutation(s): 0 
UniProt
Find proteins for A0A385DVU6 (Bacteroides phage crAss001)
Explore A0A385DVU6 
Go to UniProtKB:  A0A385DVU6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A385DVU6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Muzzle protein gp441,371Bacteroides phage crAss001Mutation(s): 0 
UniProt
Find proteins for A0A385DVD6 (Bacteroides phage crAss001)
Explore A0A385DVD6 
Go to UniProtKB:  A0A385DVD6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A385DVD6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Cargo protein 1 gp45842Bacteroides phage crAss001Mutation(s): 0 
UniProt
Find proteins for A0A385DV85 (Bacteroides phage crAss001)
Explore A0A385DV85 
Go to UniProtKB:  A0A385DV85
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A385DV85
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Portal protein gp20806Bacteroides phage crAss001Mutation(s): 0 
UniProt
Find proteins for A0A385DT68 (Bacteroides phage crAss001)
Explore A0A385DT68 
Go to UniProtKB:  A0A385DT68
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A385DT68
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Portal vertex capsid protein gp57104Bacteroides phage crAss001Mutation(s): 0 
UniProt
Find proteins for A0A385DTA3 (Bacteroides phage crAss001)
Explore A0A385DTA3 
Go to UniProtKB:  A0A385DTA3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A385DTA3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Ring protein 1 gp43236Bacteroides phage crAss001Mutation(s): 0 
UniProt
Find proteins for A0A385DT91 (Bacteroides phage crAss001)
Explore A0A385DT91 
Go to UniProtKB:  A0A385DT91
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A385DT91
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Ring protein 2 gp40225Bacteroides phage crAss001Mutation(s): 0 
UniProt
Find proteins for A0A385DT87 (Bacteroides phage crAss001)
Explore A0A385DT87 
Go to UniProtKB:  A0A385DT87
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A385DT87
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Ring protein 3 gp35230Bacteroides phage crAss001Mutation(s): 0 
UniProt
Find proteins for A0A385DV73 (Bacteroides phage crAss001)
Explore A0A385DV73 
Go to UniProtKB:  A0A385DV73
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A385DV73
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Ring protein 4/5 gp34238Bacteroides phage crAss001Mutation(s): 0 
UniProt
Find proteins for A0A385DVC3 (Bacteroides phage crAss001)
Explore A0A385DVC3 
Go to UniProtKB:  A0A385DVC3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A385DVC3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Tail fiber protein gp22832Bacteroides phage crAss001Mutation(s): 0 
UniProt
Find proteins for A0A385DVT1 (Bacteroides phage crAss001)
Explore A0A385DVT1 
Go to UniProtKB:  A0A385DVT1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A385DVT1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Tail hub protein A gp38215Bacteroides phage crAss001Mutation(s): 0 
UniProt
Find proteins for A0A385DTH1 (Bacteroides phage crAss001)
Explore A0A385DTH1 
Go to UniProtKB:  A0A385DTH1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A385DTH1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Tail hub protein B gp39114Bacteroides phage crAss001Mutation(s): 0 
UniProt
Find proteins for A0A385DVM6 (Bacteroides phage crAss001)
Explore A0A385DVM6 
Go to UniProtKB:  A0A385DVM6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A385DVM6
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download Ideal Coordinates CCD File 
ADB [auth E120]
AEB [auth E354]
AFB [auth E508]
BDB [auth E129]
BEB [auth E363]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.39 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report

Currently 8CKB does not have a validation slider image.



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom206377

Revision History  (Full details and data files)

  • Version 1.0: 2023-11-22
    Type: Initial release
  • Version 2.0: 2023-11-29
    Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Polymer sequence, Structure summary
  • Version 3.0: 2024-03-06
    Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Polymer sequence, Structure summary
  • Version 3.1: 2024-10-16
    Changes: Structure summary