8CID | pdb_00008cid

Crystal structure of Oryza sativa UAM 2

PDB DOI: https://doi.org/10.2210/pdb8CID/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Oryza sativa
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-02-09 Released: 2024-02-21
Deposition Author(s): Fredslund, F., Adams, P.D., Welner, D.H.
Funding Organization(s): Novo Nordisk Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.60 Å
R-Value Free:
0.273 (Depositor), 0.274 (DCC)
R-Value Work:
0.244 (Depositor), 0.244 (DCC)
R-Value Observed:
0.247 (Depositor)

Starting Model: in silico
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This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of Oryza sativa UAM 2

Fredslund, F., Adams, P.D., Welner, D.H.

To be published.

Macromolecule Content

Total Structure Weight: 77.91 kDa
Atom Count: 5,424
Modeled Residue Count: 688
Deposited Residue Count: 694
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
UDP-arabinopyranose mutase	A, B	347	Oryza sativa	Mutation(s): 0 Gene Names: amy, H0112G12.3 EC: 5.4.99.30
UniProt
Find proteins for Q7FAY6 (Oryza sativa subsp. japonica) Explore Q7FAY6 Go to UniProtKB: Q7FAY6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q7FAY6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.60 Å
R-Value Free: 0.273 (Depositor), 0.274 (DCC)
R-Value Work: 0.244 (Depositor), 0.244 (DCC)
R-Value Observed: 0.247 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 115.39	α = 90
b = 115.39	β = 90
c = 157.9	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
MOSFLM	data reduction
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-02-21

Deposition Author(s):

Funding Organization	Location	Grant Number
Novo Nordisk Foundation	Denmark	NNF20CC0035580

Revision History (Full details and data files)

Version 1.0: 2024-02-21
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.