8CE9

Crystal structure of human Cd11b I domain in C121 space group

PDB DOI: https://doi.org/10.2210/pdb8CE9/pdb

Classification: CELL ADHESION
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-02-01 Released: 2023-03-22
Deposition Author(s): Koekemoer, L., Williams, E., Ni, X., Gao, Q., Coker, J., MacLean, E.M., Wright, N.D., Marsden, B., Von Delft, F., Schwenzer, A., Midwood, K.
Funding Organization(s): University of Oxford, Medical Sciences Internal Fund (MSIF)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.11 Å
R-Value Free: 0.239
R-Value Work: 0.188

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of human Cd11b I domain in C121 space group

Koekemoer, L., Williams, E., Ni, X., Gao, Q., Coker, J., MacLean, E.M., Wright, N.D., Marsden, B., Von Delft, F., Schwenzer, A., Midwood, K.

To be published.

Macromolecule Content

Total Structure Weight: 51.02 kDa
Atom Count: 3,207
Modelled Residue Count: 380
Deposited Residue Count: 430
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Integrin alpha-M	A [auth B], B [auth A]	215	Homo sapiens	Mutation(s): 0 Gene Names: ITGAM, CD11B, CR3A
UniProt & NIH Common Fund Data Resources
Find proteins for P11215 (Homo sapiens) Explore P11215 Go to UniProtKB: P11215
PHAROS: P11215 GTEx: ENSG00000169896
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P11215
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain C [auth B] SDF format, chain I [auth B] SDF format, chain P [auth A] SDF format, chain S [auth A] SDF format, chain T [auth A] MOL2 format, chain C [auth B] MOL2 format, chain I [auth B] MOL2 format, chain P [auth A] MOL2 format, chain S [auth A] MOL2 format, chain T [auth A] mmCIF format, chain C [auth B] mmCIF format, chain I [auth B] mmCIF format, chain P [auth A] mmCIF format, chain S [auth A] mmCIF format, chain T [auth A]	C [auth B], I [auth B], P [auth A], S [auth A], T [auth A]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain C [auth B] Focus chain I [auth B] Focus chain P [auth A] Focus chain S [auth A] Focus chain T [auth A] Interactions & Density Focus chain C [auth B] Focus chain I [auth B] Focus chain P [auth A] Focus chain S [auth A] Focus chain T [auth A]
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain AA [auth A] SDF format, chain D [auth B] SDF format, chain E [auth B] SDF format, chain F [auth B] SDF format, chain G [auth B] SDF format, chain H [auth B] SDF format, chain J [auth B] SDF format, chain K [auth B] SDF format, chain L [auth B] SDF format, chain M [auth B] SDF format, chain N [auth B] SDF format, chain O [auth A] SDF format, chain Q [auth A] SDF format, chain R [auth A] SDF format, chain U [auth A] SDF format, chain V [auth A] SDF format, chain W [auth A] SDF format, chain X [auth A] SDF format, chain Y [auth A] SDF format, chain Z [auth A] MOL2 format, chain AA [auth A] MOL2 format, chain D [auth B] MOL2 format, chain E [auth B] MOL2 format, chain F [auth B] MOL2 format, chain G [auth B] MOL2 format, chain H [auth B] MOL2 format, chain J [auth B] MOL2 format, chain K [auth B] MOL2 format, chain L [auth B] MOL2 format, chain M [auth B] MOL2 format, chain N [auth B] MOL2 format, chain O [auth A] MOL2 format, chain Q [auth A] MOL2 format, chain R [auth A] MOL2 format, chain U [auth A] MOL2 format, chain V [auth A] MOL2 format, chain W [auth A] MOL2 format, chain X [auth A] MOL2 format, chain Y [auth A] MOL2 format, chain Z [auth A] mmCIF format, chain AA [auth A] mmCIF format, chain D [auth B] mmCIF format, chain E [auth B] mmCIF format, chain F [auth B] mmCIF format, chain G [auth B] mmCIF format, chain H [auth B] mmCIF format, chain J [auth B] mmCIF format, chain K [auth B] mmCIF format, chain L [auth B] mmCIF format, chain M [auth B] mmCIF format, chain N [auth B] mmCIF format, chain O [auth A] mmCIF format, chain Q [auth A] mmCIF format, chain R [auth A] mmCIF format, chain U [auth A] mmCIF format, chain V [auth A] mmCIF format, chain W [auth A] mmCIF format, chain X [auth A] mmCIF format, chain Y [auth A] mmCIF format, chain Z [auth A]	AA [auth A] D [auth B] E [auth B] F [auth B] G [auth B] AA [auth A], D [auth B], E [auth B], F [auth B], G [auth B], H [auth B], J [auth B], K [auth B], L [auth B], M [auth B], N [auth B], O [auth A], Q [auth A], R [auth A], U [auth A], V [auth A], W [auth A], X [auth A], Y [auth A], Z [auth A]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain AA [auth A] Focus chain D [auth B] Focus chain E [auth B] Focus chain F [auth B] Focus chain G [auth B] Focus chain H [auth B] Focus chain J [auth B] Focus chain K [auth B] Focus chain L [auth B] Focus chain M [auth B] Focus chain N [auth B] Focus chain O [auth A] Focus chain Q [auth A] Focus chain R [auth A] Focus chain U [auth A] Focus chain V [auth A] Focus chain W [auth A] Focus chain X [auth A] Focus chain Y [auth A] Focus chain Z [auth A] Interactions & Density Focus chain AA [auth A] Focus chain D [auth B] Focus chain E [auth B] Focus chain F [auth B] Focus chain G [auth B] Focus chain H [auth B] Focus chain J [auth B] Focus chain K [auth B] Focus chain L [auth B] Focus chain M [auth B] Focus chain N [auth B] Focus chain O [auth A] Focus chain Q [auth A] Focus chain R [auth A] Focus chain U [auth A] Focus chain V [auth A] Focus chain W [auth A] Focus chain X [auth A] Focus chain Y [auth A] Focus chain Z [auth A]