8BQ1 | pdb_00008bq1

Herpes simplex virus type 1 protease

PDB DOI: https://doi.org/10.2210/pdb8BQ1/pdb

Classification: VIRAL PROTEIN
Organism(s): Human alphaherpesvirus 1 strain 17
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-11-18 Released: 2023-11-29
Deposition Author(s): Pachota, M., Grzywa, R., Plewka, J., Wilk, P., Mackereth, C., Czarna, A., Sienczyk, M., Pyrc, K.
Funding Organization(s): Polish National Science Centre, Foundation for Polish Science

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.32 Å
R-Value Free:
0.244 (Depositor), 0.243 (DCC)
R-Value Work:
0.195 (Depositor), 0.195 (DCC)
R-Value Observed:
0.197 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 8BQ1

This is version 1.1 of the entry. See complete history.

Literature

Herpes simplex virus type 1 protease

Pachota, M.

To be published.

Macromolecule Content

Total Structure Weight: 26.74 kDa
Atom Count: 1,504
Modeled Residue Count: 194
Deposited Residue Count: 247
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Assemblin	A	247	Human alphaherpesvirus 1 strain 17	Mutation(s): 0 Gene Names: UL26 EC: 3.4.21.97
UniProt
Find proteins for P10210 (Human herpesvirus 1 (strain 17)) Explore P10210 Go to UniProtKB: P10210
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P10210
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.32 Å
R-Value Free: 0.244 (Depositor), 0.243 (DCC)
R-Value Work: 0.195 (Depositor), 0.195 (DCC)
R-Value Observed: 0.197 (Depositor)

Space Group: P 6₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 70.08	α = 90
b = 70.08	β = 90
c = 77.33	γ = 120

Software Package:

Software Name	Purpose
XDS	data scaling
PHASER	phasing
PHENIX	refinement
XDS	data reduction

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-11-29

Deposition Author(s):

Funding Organization	Location	Grant Number
Polish National Science Centre	Poland	2017/27/N/NZ6/02328
Foundation for Polish Science	Poland	TEAM TECH CORE FACILITY/2017-4/6

Revision History (Full details and data files)

Version 1.0: 2023-11-29
Type: Initial release
Version 1.1: 2026-03-04
Changes: Refinement description, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.