8BHZ | pdb_00008bhz

The apo-crystal structure of a variant form of the 28-kDa Schistosoma bovis glutathione transferase in orthorhombic form

PDB DOI: https://doi.org/10.2210/pdb8BHZ/pdb

Classification: TRANSFERASE
Organism(s): Schistosoma bovis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-11-01 Released: 2022-11-30
Deposition Author(s): Pandian, R., Mfeka, S.M., Onisuru, O., Sayed, Y., Achilonu, I.A.
Funding Organization(s): National Research Foundation in South Africa

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free:
0.258 (Depositor), 0.257 (DCC)
R-Value Work:
0.196 (Depositor), 0.195 (DCC)
R-Value Observed:
0.199 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 8BHZ

This is version 1.2 of the entry. See complete history.

Literature

The apo-crystal structure of a variant form of the 28-kDa Schistosoma bovis glutathione transferase in orthorhombic form

Mfeka, S.M., Pandian, R., Onisuru, O., Sayed, Y., Achilonu, I.A.

To be published.

Macromolecule Content

Total Structure Weight: 24 kDa
Atom Count: 1,815
Modeled Residue Count: 204
Deposited Residue Count: 211
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutathione S-transferase class-mu 28 kDa isozyme	A	211	Schistosoma bovis	Mutation(s): 0 EC: 2.5.1.18
UniProt
Find proteins for P30114 (Schistosoma bovis) Explore P30114 Go to UniProtKB: P30114
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P30114
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.258 (Depositor), 0.257 (DCC)
R-Value Work: 0.196 (Depositor), 0.195 (DCC)
R-Value Observed: 0.199 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.796	α = 90
b = 77.57	β = 90
c = 77.185	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PHENIX	refinement
SAINT	data reduction
SADABS	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2022-11-30

Deposition Author(s):

Funding Organization	Location	Grant Number
National Research Foundation in South Africa	South Africa	130092
National Research Foundation in South Africa	South Africa	NEP Grant No 129920

Revision History (Full details and data files)

Version 1.0: 2022-11-30
Type: Initial release
Version 1.1: 2024-01-31
Changes: Data collection, Refinement description
Version 1.2: 2025-03-19
Changes: Database references, Experimental preparation, Source and taxonomy, Structure summary

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.