8BD1 | pdb_00008bd1

Crystal structure of the RhsPWHH-RhsPI toxin-immunity pair

PDB DOI: https://doi.org/10.2210/pdb8BD1/pdb

Classification: TOXIN
Organism(s): Vibrio parahaemolyticus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-10-18 Released: 2022-11-30
Deposition Author(s): Chao, W.C.H., Wu, H.W., Li, H.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.26 Å
R-Value Free:
0.219 (Depositor), 0.217 (DCC)
R-Value Work:
0.198 (Depositor), 0.198 (DCC)
R-Value Observed:
0.199 (Depositor)

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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of the RhsPWHH-RhsPI toxin-immunity pair

Chao, W.C.H.

To be published.

Macromolecule Content

Total Structure Weight: 29.97 kDa
Atom Count: 2,285
Modeled Residue Count: 257
Deposited Residue Count: 266
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Type IV secretion protein Rhs	A	134	Vibrio parahaemolyticus	Mutation(s): 0 Gene Names: CA163_08985
UniProt
Find proteins for A0A227JDU1 (Vibrio parahaemolyticus) Explore A0A227JDU1 Go to UniProtKB: A0A227JDU1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A227JDU1
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
SMI1/KNR4 family protein	B	132	Vibrio parahaemolyticus	Mutation(s): 0 Gene Names: CA163_08980
UniProt
Find proteins for A0A0L8UU71 (Vibrio parahaemolyticus) Explore A0A0L8UU71 Go to UniProtKB: A0A0L8UU71
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0L8UU71
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.26 Å
R-Value Free: 0.219 (Depositor), 0.217 (DCC)
R-Value Work: 0.198 (Depositor), 0.198 (DCC)
R-Value Observed: 0.199 (Depositor)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 51.58	α = 90
b = 51.58	β = 90
c = 206.14	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
xia2	data reduction
xia2	data scaling
PHENIX	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2022-11-30

Deposition Author(s):

Funding Organization	Location	Grant Number
Other government	Macao	MYRG2018-00221-FHS
Other government	Macao	0009/2018/A1
Other government	Macao	0032/2021/A1

Revision History (Full details and data files)

Version 1.0: 2022-11-30
Type: Initial release
Version 1.1: 2024-06-19
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.