8B9Z

Drosophila melanogaster complex I in the Active state (Dm1)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.28 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Cryo-EM structures of mitochondrial respiratory complex I from Drosophila melanogaster.

Agip, A.A.Chung, I.Sanchez-Martinez, A.Whitworth, A.J.Hirst, J.

(2023) Elife 12

  • DOI: https://doi.org/10.7554/eLife.84424
  • Primary Citation of Related Structures:  
    8B9Z, 8BA0

  • PubMed Abstract: 

    Respiratory complex I powers ATP synthesis by oxidative phosphorylation, exploiting the energy from NADH oxidation by ubiquinone to drive protons across an energy-transducing membrane. Drosophila melanogaster is a candidate model organism for complex I due to its high evolutionary conservation with the mammalian enzyme, well-developed genetic toolkit, and complex physiology for studies in specific cell types and tissues. Here, we isolate complex I from Drosophila and determine its structure, revealing a 43-subunit assembly with high structural homology to its 45-subunit mammalian counterpart, including a hitherto unknown homologue to subunit NDUFA3. The major conformational state of the Drosophila enzyme is the mammalian-type 'ready-to-go' active resting state, with a fully ordered and enclosed ubiquinone-binding site, but a subtly altered global conformation related to changes in subunit ND6. The mammalian-type 'deactive' pronounced resting state is not observed: in two minor states, the ubiquinone-binding site is unchanged, but a deactive-type π-bulge is present in ND6-TMH3. Our detailed structural knowledge of Drosophila complex I provides a foundation for new approaches to disentangle mechanisms of complex I catalysis and regulation in bioenergetics and physiology.


  • Organizational Affiliation

    The Medical Research Council Mitochondrial Biology Unit, University of Cambridge, The Keith Peters Building, Cambridge Biomedical Campus, Cambridge, United Kingdom.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 3117Drosophila melanogasterMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for P18930 (Drosophila melanogaster)
Explore P18930 
Go to UniProtKB:  P18930
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP18930
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
LD31474p182Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for Q9VXK7 (Drosophila melanogaster)
Explore Q9VXK7 
Go to UniProtKB:  Q9VXK7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VXK7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial209Drosophila melanogasterMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for Q9VZU4 (Drosophila melanogaster)
Explore Q9VZU4 
Go to UniProtKB:  Q9VZU4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VZU4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Complex I-49kD430Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for Q9V4E0 (Drosophila melanogaster)
Explore Q9V4E0 
Go to UniProtKB:  Q9V4E0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9V4E0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase (Ubiquinone) 24 kDa subunit, isoform A214Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for Q9VX36 (Drosophila melanogaster)
Explore Q9VX36 
Go to UniProtKB:  Q9VX36
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VX36
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial441Drosophila melanogasterMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for Q9VMI3 (Drosophila melanogaster)
Explore Q9VMI3 
Go to UniProtKB:  Q9VMI3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VMI3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial731Drosophila melanogasterMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for Q94511 (Drosophila melanogaster)
Explore Q94511 
Go to UniProtKB:  Q94511
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ94511
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 1315Drosophila melanogasterMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for P18929 (Drosophila melanogaster)
Explore P18929 
Go to UniProtKB:  P18929
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP18929
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase (ubiquinone) 23 kDa subunit186Drosophila melanogasterMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for Q9VF27 (Drosophila melanogaster)
Explore Q9VF27 
Go to UniProtKB:  Q9VF27
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VF27
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 6173Drosophila melanogasterMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for P18933 (Drosophila melanogaster)
Explore P18933 
Go to UniProtKB:  P18933
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP18933
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 4L96Drosophila melanogasterMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for P18934 (Drosophila melanogaster)
Explore P18934 
Go to UniProtKB:  P18934
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP18934
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 5577Drosophila melanogasterMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for P18932 (Drosophila melanogaster)
Explore P18932 
Go to UniProtKB:  P18932
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP18932
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 4446Drosophila melanogasterMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for P18931 (Drosophila melanogaster)
Explore P18931 
Go to UniProtKB:  P18931
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP18931
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 2341Drosophila melanogasterMutation(s): 0 
EC: 7.1.1.2
Membrane Entity: Yes 
UniProt
Find proteins for P03896 (Drosophila melanogaster)
Explore P03896 
Go to UniProtKB:  P03896
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP03896
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial368Drosophila melanogasterMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P91929 (Drosophila melanogaster)
Explore P91929 
Go to UniProtKB:  P91929
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP91929
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase (Ubiquinone) 39 kDa subunit, isoform A377Drosophila melanogasterMutation(s): 0 
EC: 1.6.99.3
UniProt
Find proteins for Q9VPE2 (Drosophila melanogaster)
Explore Q9VPE2 
Go to UniProtKB:  Q9VPE2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VPE2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial151Drosophila melanogasterMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q9VWI0 (Drosophila melanogaster)
Explore Q9VWI0 
Go to UniProtKB:  Q9VWI0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VWI0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial89Drosophila melanogasterMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q9VMU0 (Drosophila melanogaster)
Explore Q9VMU0 
Go to UniProtKB:  Q9VMU0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VMU0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
Acyl carrier protein, mitochondrialS [auth T],
T [auth U]
85Drosophila melanogasterMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q94519 (Drosophila melanogaster)
Explore Q94519 
Go to UniProtKB:  Q94519
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ94519
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase (Ubiquinone) 13 kDa B subunitU [auth V]118Drosophila melanogasterMutation(s): 0 
EC: 1.6.99.3
Membrane Entity: Yes 
UniProt
Find proteins for Q9VTB4 (Drosophila melanogaster)
Explore Q9VTB4 
Go to UniProtKB:  Q9VTB4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VTB4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6V [auth W]114Drosophila melanogasterMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q7JZK1 (Drosophila melanogaster)
Explore Q7JZK1 
Go to UniProtKB:  Q7JZK1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7JZK1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8W [auth X]174Drosophila melanogasterMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q9W125 (Drosophila melanogaster)
Explore Q9W125 
Go to UniProtKB:  Q9W125
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9W125
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11X [auth Y]167Drosophila melanogasterMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q7JYH3 (Drosophila melanogaster)
Explore Q7JYH3 
Go to UniProtKB:  Q7JYH3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7JYH3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13Y [auth Z]146Drosophila melanogasterMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q9W402 (Drosophila melanogaster)
Explore Q9W402 
Go to UniProtKB:  Q9W402
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9W402
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1Z [auth a]73Drosophila melanogasterMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A8DYC5 (Drosophila melanogaster)
Explore A8DYC5 
Go to UniProtKB:  A8DYC5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8DYC5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
RH45008pAA [auth b]66Drosophila melanogasterMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q9W380 (Drosophila melanogaster)
Explore Q9W380 
Go to UniProtKB:  Q9W380
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9W380
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 subunit C2BA [auth d]115Drosophila melanogasterMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q9VQM2 (Drosophila melanogaster)
Explore Q9VQM2 
Go to UniProtKB:  Q9VQM2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VQM2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5CA [auth e]100Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for Q7K1C0 (Drosophila melanogaster)
Explore Q7K1C0 
Go to UniProtKB:  Q7K1C0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7K1C0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1DA [auth f]55Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for Q9W3N7 (Drosophila melanogaster)
Explore Q9W3N7 
Go to UniProtKB:  Q9W3N7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9W3N7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrialEA [auth g]108Drosophila melanogasterMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q9V3L7 (Drosophila melanogaster)
Explore Q9V3L7 
Go to UniProtKB:  Q9V3L7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9V3L7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrialFA [auth h]145Drosophila melanogasterMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q9VTU2 (Drosophila melanogaster)
Explore Q9VTU2 
Go to UniProtKB:  Q9VTU2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VTU2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6GA [auth i]161Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for Q9V3W2 (Drosophila melanogaster)
Explore Q9V3W2 
Go to UniProtKB:  Q9V3W2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9V3W2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
GEO11417p1HA [auth j]66Drosophila melanogasterMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q7PL91 (Drosophila melanogaster)
Explore Q7PL91 
Go to UniProtKB:  Q7PL91
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7PL91
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3IA [auth k]84Drosophila melanogasterMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q9W2E8 (Drosophila melanogaster)
Explore Q9W2E8 
Go to UniProtKB:  Q9W2E8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9W2E8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrialJA [auth l]146Drosophila melanogasterMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q9W3X7 (Drosophila melanogaster)
Explore Q9W3X7 
Go to UniProtKB:  Q9W3X7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9W3X7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4KA [auth m]108Drosophila melanogasterMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q6IDF5 (Drosophila melanogaster)
Explore Q6IDF5 
Go to UniProtKB:  Q6IDF5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6IDF5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9LA [auth n]134Drosophila melanogasterMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q9VJZ4 (Drosophila melanogaster)
Explore Q9VJZ4 
Go to UniProtKB:  Q9VJZ4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VJZ4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7MA [auth o]112Drosophila melanogasterMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q9VXZ0 (Drosophila melanogaster)
Explore Q9VXZ0 
Go to UniProtKB:  Q9VXZ0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VXZ0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10NA [auth p]151Drosophila melanogasterMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q9VQR2 (Drosophila melanogaster)
Explore Q9VQR2 
Go to UniProtKB:  Q9VQR2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VQR2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12OA [auth q]133Drosophila melanogasterMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q9VQD7 (Drosophila melanogaster)
Explore Q9VQD7 
Go to UniProtKB:  Q9VQD7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VQD7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7PA [auth r]103Drosophila melanogasterMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for O97418 (Drosophila melanogaster)
Explore O97418 
Go to UniProtKB:  O97418
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO97418
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrialQA [auth s]62Drosophila melanogasterMutation(s): 0 
UniProt
Find proteins for Q9VZ01 (Drosophila melanogaster)
Explore Q9VZ01 
Go to UniProtKB:  Q9VZ01
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VZ01
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 12 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CDL
Query on CDL

Download Ideal Coordinates CCD File 
BC [auth h],
CC [auth h],
SB [auth P],
WA [auth B]
CARDIOLIPIN
C81 H156 O17 P2
XVTUQDWPJJBEHJ-KZCWQMDCSA-L
UQ9 (Subject of Investigation/LOI)
Query on UQ9

Download Ideal Coordinates CCD File 
EB [auth H]Ubiquinone-9
C54 H82 O4
UUGXJSBPSRROMU-YJKFELPISA-N
PC1
Query on PC1

Download Ideal Coordinates CCD File 
DC [auth i],
IB [auth J],
RA [auth A]
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
C44 H88 N O8 P
NRJAVPSFFCBXDT-HUESYALOSA-N
3PE
Query on 3PE

Download Ideal Coordinates CCD File 
AC [auth d]
FB [auth H]
JB [auth J]
KB [auth J]
LB [auth L]
AC [auth d],
FB [auth H],
JB [auth J],
KB [auth J],
LB [auth L],
MB [auth L],
NB [auth L],
OB [auth M],
PB [auth N],
SA [auth A],
TA [auth A],
VA [auth B],
WB [auth X],
XB [auth Y],
YB [auth Y],
ZB [auth Y]
1,2-Distearoyl-sn-glycerophosphoethanolamine
C41 H82 N O8 P
LVNGJLRDBYCPGB-LDLOPFEMSA-N
NDP
Query on NDP

Download Ideal Coordinates CCD File 
RB [auth P]NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
EHZ
Query on EHZ

Download Ideal Coordinates CCD File 
UB [auth T],
VB [auth U]
~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate
C25 H49 N2 O9 P S
JYSKQPQRUCZFIQ-REWPJTCUSA-N
DGT
Query on DGT

Download Ideal Coordinates CCD File 
QB [auth O]2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
HAAZLUGHYHWQIW-KVQBGUIXSA-N
FMN
Query on FMN

Download Ideal Coordinates CCD File 
YA [auth F]FLAVIN MONONUCLEOTIDE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
SF4
Query on SF4

Download Ideal Coordinates CCD File 
AB [auth G]
BB [auth G]
GB [auth I]
HB [auth I]
UA [auth B]
AB [auth G],
BB [auth G],
GB [auth I],
HB [auth I],
UA [auth B],
ZA [auth F]
IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-UHFFFAOYSA-N
FES
Query on FES

Download Ideal Coordinates CCD File 
CB [auth G],
XA [auth E]
FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
ZN
Query on ZN

Download Ideal Coordinates CCD File 
TB [auth R]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
NA
Query on NA

Download Ideal Coordinates CCD File 
DB [auth G]SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
2MR
Query on 2MR
D
L-PEPTIDE LINKINGC8 H18 N4 O2ARG
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.28 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1
MODEL REFINEMENTPHENIX1.18.2-3874

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (MRC, United Kingdom)United KingdomMC_UU_00015/2
Medical Research Council (MRC, United Kingdom)United KingdomMC_UU_00028/1

Revision History  (Full details and data files)

  • Version 1.0: 2023-01-18
    Type: Initial release
  • Version 1.1: 2024-10-23
    Changes: Data collection, Refinement description, Structure summary