8B73 | pdb_00008b73

Acetivibrio clariflavus beta-1,4-xylanase of Glycoside Hydrolase Family 10 (AcXyn10A).

PDB DOI: https://doi.org/10.2210/pdb8B73/pdb

Classification: HYDROLASE
Organism(s): Acetivibrio clariflavus
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2022-09-28 Released: 2022-10-19
Deposition Author(s): Hussain, N., James, J.H., Halina, M.
Funding Organization(s): Commonwealth Scholarship Commission (United Kingdom), Wellcome Trust

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.24 Å
R-Value Free:
0.232 (Depositor), 0.241 (DCC)
R-Value Work:
0.206 (Depositor), 0.215 (DCC)

wwPDB Validation 3D Report Full Report

Validation slider image for 8B73

This is version 1.3 of the entry. See complete history.

Literature

To be decided. Not published yet.

Hussain, N., James, J.H., Halina, M.

To be published.

Macromolecule Content

Total Structure Weight: 95.06 kDa
Atom Count: 6,741
Modeled Residue Count: 810
Deposited Residue Count: 826
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Beta-xylanase	A, B	413	Acetivibrio clariflavus	Mutation(s): 0 Gene Names: Clocl_0045 EC: 3.2.1.8
UniProt
Find proteins for G8LZE0 (Acetivibrio clariflavus (strain DSM 19732 / NBRC 101661 / EBR45)) Explore G8LZE0 Go to UniProtKB: G8LZE0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G8LZE0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.24 Å
R-Value Free: 0.232 (Depositor), 0.241 (DCC)
R-Value Work: 0.206 (Depositor), 0.215 (DCC)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.566	α = 90
b = 88.916	β = 90
c = 173.479	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
xia2	data reduction
xia2.multiplex	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2022-10-19

Deposition Author(s):

Funding Organization	Location	Grant Number
Commonwealth Scholarship Commission (United Kingdom)	United Kingdom	PKCN-2019-176
Wellcome Trust	United Kingdom	100209/Z/12/Z

Revision History (Full details and data files)

Version 1.0: 2022-10-19
Type: Initial release
Version 1.1: 2022-11-09
Changes: Database references
Version 1.2: 2023-04-26
Changes: Structure summary
Version 1.3: 2024-06-19
Changes: Data collection, Refinement description

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.