Pol II-CSB-CSA-DDB1-ELOF1 structure.
Kokic, G., Cramer, P.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit | 1,970 | Sus scrofa domesticus | Mutation(s): 0  EC: 2.7.7.6 | ||
UniProt | |||||
Find proteins for A0A8D1DPV6 (Sus scrofa) Explore A0A8D1DPV6  Go to UniProtKB:  A0A8D1DPV6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A8D1DPV6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit beta | 1,167 | Sus scrofa domesticus | Mutation(s): 0  EC: 2.7.7.6 | ||
UniProt | |||||
Find proteins for I3LGP4 (Sus scrofa) Explore I3LGP4  Go to UniProtKB:  I3LGP4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | I3LGP4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase II subunit RPB3 | 275 | Sus scrofa domesticus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for I3LCH3 (Sus scrofa) Explore I3LCH3  Go to UniProtKB:  I3LCH3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | I3LCH3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
RNA polymerase II subunit D | 142 | Sus scrofa domesticus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A0A4X1VM56 (Sus scrofa) Explore A0A4X1VM56  Go to UniProtKB:  A0A4X1VM56 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A4X1VM56 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase II subunit E | 210 | Sus scrofa domesticus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for I3LSI7 (Sus scrofa) Explore I3LSI7  Go to UniProtKB:  I3LSI7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | I3LSI7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase II subunit F | 127 | Sus scrofa domesticus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A0A4X1VEK9 (Sus scrofa) Explore A0A4X1VEK9  Go to UniProtKB:  A0A4X1VEK9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A4X1VEK9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase II subunit RPB7 | 172 | Sus scrofa domesticus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A0A4X1VKG7 (Sus scrofa) Explore A0A4X1VKG7  Go to UniProtKB:  A0A4X1VKG7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A4X1VKG7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerases I, II, and III subunit RPABC3 | 150 | Sus scrofa domesticus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for I3LCB2 (Sus scrofa) Explore I3LCB2  Go to UniProtKB:  I3LCB2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | I3LCB2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase II subunit RPB9 | 125 | Sus scrofa domesticus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for P60899 (Sus scrofa) Explore P60899  Go to UniProtKB:  P60899 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P60899 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerases I, II, and III subunit RPABC5 | 67 | Sus scrofa domesticus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A0A8W4F9W9 (Sus scrofa) Explore A0A8W4F9W9  Go to UniProtKB:  A0A8W4F9W9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A8W4F9W9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
RNA_pol_L_2 domain-containing protein | 117 | Sus scrofa domesticus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for F1RKE4 (Sus scrofa) Explore F1RKE4  Go to UniProtKB:  F1RKE4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | F1RKE4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
RNA polymerase II subunit K | 58 | Sus scrofa domesticus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A0A4X1TRS6 (Sus scrofa) Explore A0A4X1TRS6  Go to UniProtKB:  A0A4X1TRS6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A4X1TRS6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 13 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Transcription elongation factor 1 homolog | 83 | Homo sapiens | Mutation(s): 0  Gene Names: ELOF1, hCG_29982 | ||
UniProt | |||||
Find proteins for A0A8D1B522 (Sus scrofa) Explore A0A8D1B522  Go to UniProtKB:  A0A8D1B522 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A8D1B522 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 17 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA excision repair protein ERCC-8 | Q [auth a] | 396 | Homo sapiens | Mutation(s): 0  Gene Names: ERCC8, CKN1, CSA | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q13216 (Homo sapiens) Explore Q13216  Go to UniProtKB:  Q13216 | |||||
PHAROS:  Q13216 GTEx:  ENSG00000049167  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q13216 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 18 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA excision repair protein ERCC-6 | R [auth b] | 1,496 | Homo sapiens | Mutation(s): 0  Gene Names: ERCC6, CSB EC: 3.6.4 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q03468 (Homo sapiens) Explore Q03468  Go to UniProtKB:  Q03468 | |||||
PHAROS:  Q03468 GTEx:  ENSG00000225830  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q03468 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 19 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA damage-binding protein 1 | S [auth d] | 1,140 | Homo sapiens | Mutation(s): 0  Gene Names: DDB1, XAP1 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q16531 (Homo sapiens) Explore Q16531  Go to UniProtKB:  Q16531 | |||||
PHAROS:  Q16531 GTEx:  ENSG00000167986  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q16531 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 14 | |||||
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Molecule | Chains | Length | Organism | Image | |
NTS | 52 | Homo sapiens | |||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 15 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
RNA | O [auth P] | 10 | Homo sapiens | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 16 | |||||
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Molecule | Chains | Length | Organism | Image | |
TS | P [auth T] | 52 | Homo sapiens | ||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | AA [auth J] BA [auth L] CA [auth M] T [auth A] U [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
MG Query on MG | V [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Funding Organization | Location | Grant Number |
---|---|---|
German Research Foundation (DFG) | Germany | EXC 2067/1-390729940 |
European Research Council (ERC) | European Union | Advanced Investigator Grant CHROMATRANS (grant agreement No. 882357) |