8B3A

catalytic amyloid fibril formed by Ac-LHLHLRL-amide


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Cryo-EM structure of a catalytic amyloid fibril.

Heerde, T.Bansal, A.Schmidt, M.Fandrich, M.

(2023) Sci Rep 13: 4070-4070

  • DOI: https://doi.org/10.1038/s41598-023-30711-y
  • Primary Citation of Related Structures:  
    8B3A

  • PubMed Abstract: 

    Catalytic amyloid fibrils are novel types of bioinspired, functional materials that combine the chemical and mechanical robustness of amyloids with the ability to catalyze a certain chemical reaction. In this study we used cryo-electron microcopy to analyze the amyloid fibril structure and the catalytic center of amyloid fibrils that hydrolyze ester bonds. Our findings show that catalytic amyloid fibrils are polymorphic and consist of similarly structured, zipper-like building blocks that consist of mated cross-β sheets. These building blocks define the fibril core, which is decorated by a peripheral leaflet of peptide molecules. The observed structural arrangement differs from previously described catalytic amyloid fibrils and yielded a new model of the catalytic center.


  • Organizational Affiliation

    Institute of Protein Biochemistry, Ulm University, 89081, Ulm, Germany. thomas.heerde@uni-ulm.de.


Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ACE-LEU-HIS-LEU-HIS-LEU-ARG-LEU-NH29Homo sapiensMutation(s): 0 
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.16-3549
RECONSTRUCTIONRELION3.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanyDFG FA 456/23
German Research Foundation (DFG)GermanyCRC 1279/2 project A03

Revision History  (Full details and data files)

  • Version 1.0: 2023-04-05
    Type: Initial release