8AW4

Structure of a complex of biosynthetic proteins bB-E3 and bGFPD-YY

PDB DOI: https://doi.org/10.2210/pdb8AW4/pdb

Classification: BIOSYNTHETIC PROTEIN
Organism(s): synthetic construct
Expression System: synthetic construct
Mutation(s): No

Deposited: 2022-08-29 Released: 2022-12-28
Deposition Author(s): Li de la Sierra-Gallay, I.
Funding Organization(s): French Infrastructure for Integrated Structural Biology (FRISBI), Agence Nationale de la Recherche (ANR)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.21 Å
R-Value Free: 0.218
R-Value Work: 0.202
R-Value Observed: 0.203

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Hot spot induction allows selection of protein binders targeted to a predefined region of a bait protein

Gomes, M., Degaugue, A., Gourmelon, F., Villain, G., Mesneau, A., Noiray, M., Aumont-Nicaise, M., Li de la Sierra-Gallay, I., van Tilbeurgh, H., Valerio-Lepiniec, M., Minard, P., Urvoas, A.

To be published.

Macromolecule Content

Total Structure Weight: 40.22 kDa
Atom Count: 2,305
Modelled Residue Count: 299
Deposited Residue Count: 368
Unique protein chains: 2

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ALPHAREP bB-E3	A	201	synthetic construct	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
ALPHAREP bGFPD-YY	B	167	synthetic construct	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.21 Å
R-Value Free: 0.218
R-Value Work: 0.202
R-Value Observed: 0.203
Space Group: H 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 124.33	α = 90
b = 124.33	β = 90
c = 110.59	γ = 120

Software Package:

Software Name	Purpose
BUSTER	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
XDS	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2022-12-28

Deposition Author(s):

Li de la Sierra-Gallay, I.

Funding Organization	Location	Grant Number
French Infrastructure for Integrated Structural Biology (FRISBI)	France	ANR-10-INSB-05-05
Agence Nationale de la Recherche (ANR)	France	ANR-18-CE44-0013

Revision History (Full details and data files)

Version 1.0: 2022-12-28
Type: Initial release
Version 1.1: 2024-01-31
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.