8AW4 | pdb_00008aw4

Structure of a complex of biosynthetic proteins bB-E3 and bGFPD-YY

PDB DOI: https://doi.org/10.2210/pdb8AW4/pdb

Classification: BIOSYNTHETIC PROTEIN
Organism(s): synthetic construct
Expression System: synthetic construct
Mutation(s): No

Deposited: 2022-08-29 Released: 2022-12-28
Deposition Author(s): Li de la Sierra-Gallay, I.
Funding Organization(s): French Infrastructure for Integrated Structural Biology (FRISBI), Agence Nationale de la Recherche (ANR)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.21 Å
R-Value Free:
0.218 (Depositor), 0.227 (DCC)
R-Value Work:
0.202 (Depositor), 0.208 (DCC)
R-Value Observed:
0.203 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Hot spot induction allows selection of protein binders targeted to a predefined region of a bait protein

Gomes, M., Degaugue, A., Gourmelon, F., Villain, G., Mesneau, A., Noiray, M., Aumont-Nicaise, M., Li de la Sierra-Gallay, I., van Tilbeurgh, H., Valerio-Lepiniec, M., Minard, P., Urvoas, A.

To be published.

Macromolecule Content

Total Structure Weight: 40.22 kDa
Atom Count: 2,305
Modeled Residue Count: 299
Deposited Residue Count: 368
Unique protein chains: 2

Macromolecules

Find similar proteins by:

| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ALPHAREP bB-E3	A	201	synthetic construct	Mutation(s): 0

Find similar proteins by:

| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
ALPHAREP bGFPD-YY	B	167	synthetic construct	Mutation(s): 0

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.21 Å
R-Value Free: 0.218 (Depositor), 0.227 (DCC)
R-Value Work: 0.202 (Depositor), 0.208 (DCC)
R-Value Observed: 0.203 (Depositor)

Space Group: H 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 124.33	α = 90
b = 124.33	β = 90
c = 110.59	γ = 120

Software Package:

Software Name	Purpose
BUSTER	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
XDS	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2022-12-28

Deposition Author(s):

Li de la Sierra-Gallay, I.

Funding Organization	Location	Grant Number
French Infrastructure for Integrated Structural Biology (FRISBI)	France	ANR-10-INSB-05-05
Agence Nationale de la Recherche (ANR)	France	ANR-18-CE44-0013

Revision History (Full details and data files)

Version 1.0: 2022-12-28
Type: Initial release
Version 1.1: 2024-01-31
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.