Download MendeleyStructural basis for acyl hydrolysis in trans-AT polyketide synthases
Fage, C.D., Passmore, M., Tatman, B., Smith, H.G., Jian, X., Mudiyanselage, U.C.M., Berger, M., Cisneros, A.G., Challis, G.L., Lewandowski, J.R., Jenner, M.To be published.
8AW0
Crystal structure of PksD, the trans-acting acyl hydrolase domain from the bacillaene trans-AT PKS (native)
- PDB DOI: https://doi.org/10.2210/pdb8AW0/pdb
- Classification: HYDROLASE
- Organism(s): Bacillus subtilis subsp. subtilis str. 168
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2022-08-28 Released: 2023-08-09
- Funding Organization(s): Biotechnology and Biological Sciences Research Council (BBSRC)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.227
- R-Value Work: 0.198
- R-Value Observed: 0.199
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Polyketide biosynthesis acyltransferase homolog PksD | 327 | Bacillus subtilis subsp. subtilis str. 168 | Mutation(s): 0 Gene Names: pksD, BSU17110 EC: 2.3.1 |  | |
UniProt | |||||
Find proteins for O34877 (Bacillus subtilis (strain 168)) Explore O34877 Go to UniProtKB: O34877 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O34877 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN (Subject of Investigation/LOI) Query on ZN | I [auth A], J [auth B], K [auth C], L [auth E] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.227
- R-Value Work: 0.198
- R-Value Observed: 0.199
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 151.202 | α = 90 |
| b = 163.33 | β = 104.5 |
| c = 186.871 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PDB_EXTRACT | data extraction |
| PHENIX | refinement |
| PHASER | phasing |
| Aimless | data scaling |
| XDS | data reduction |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-08-09 Deposition Author(s): Fage, C.D., Challis, G.L., Lewandowski, J., Jenner, M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Biotechnology and Biological Sciences Research Council (BBSRC) | United Kingdom | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-08-09
Type: Initial release - Version 1.1: 2024-06-19
Changes: Data collection
