8AEP | pdb_00008aep

Reductase domain of the carboxylate reductase of Neurospora crassa


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 
    0.259 (Depositor), 0.260 (DCC) 
  • R-Value Work: 
    0.200 (Depositor), 0.202 (DCC) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 8AEP

This is version 1.2 of the entry. See complete history

Literature

Structure of the Reductase Domain of a Fungal Carboxylic Acid Reductase and Its Substrate Scope in Thioester and Aldehyde Reduction.

Daniel, B.Hashem, C.Leithold, M.Sagmeister, T.Tripp, A.Stolterfoht-Stock, H.Messenlehner, J.Keegan, R.Winkler, C.K.Ling, J.G.Younes, S.H.H.Oberdorfer, G.Abu Bakar, F.D.Gruber, K.Pavkov-Keller, T.Winkler, M.

(2022) ACS Catal 12: 15668-15674

  • DOI: https://doi.org/10.1021/acscatal.2c04426
  • Primary Citation Related Structures: 
    8AEP

  • PubMed Abstract: 

    The synthesis of aldehydes from carboxylic acids has long been a challenge in chemistry. In contrast to the harsh chemically driven reduction, enzymes such as carboxylic acid reductases (CARs) are considered appealing biocatalysts for aldehyde production. Although structures of single- and didomains of microbial CARs have been reported, to date no full-length protein structure has been elucidated. In this study, we aimed to obtain structural and functional information regarding the reductase (R) domain of a CAR from the fungus Neurospora crassa ( Nc ). The Nc CAR R-domain revealed activity for N -acetylcysteamine thioester (S-(2-acetamidoethyl) benzothioate), which mimics the phosphopantetheinylacyl-intermediate and can be anticipated as the minimal substrate for thioester reduction by CARs. The determined crystal structure of the Nc CAR R-domain reveals a tunnel that putatively harbors the phosphopantetheinylacyl-intermediate, which is in good agreement with docking experiments performed with the minimal substrate. In vitro studies were performed with this highly purified R-domain and NADPH, demonstrating carbonyl reduction activity. The R-domain was able to accept not only a simple aromatic ketone but also benzaldehyde and octanal, which are typically considered to be the final product of carboxylic acid reduction by CAR. Also, the full-length Nc CAR reduced aldehydes to primary alcohols. In conclusion, aldehyde overreduction can no longer be attributed exclusively to the host background.


  • Organizational Affiliation
    • acib - Austrian Center of Industrial Biotechnology, Krenngasse 37, 8010Graz, Austria.

Macromolecule Content 

  • Total Structure Weight: 90.07 kDa 
  • Atom Count: 6,959 
  • Modeled Residue Count: 792 
  • Deposited Residue Count: 806 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Acetyl-CoA synthetase-like protein
A, B
403Neurospora crassaMutation(s): 0 
Gene Names: GE21DRAFT_9612
EC: 1.2.1 (UniProt), 1.2.1.30 (UniProt)
UniProt
Find proteins for Q7RW48 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
Explore Q7RW48 
Go to UniProtKB:  Q7RW48
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7RW48
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free:  0.259 (Depositor), 0.260 (DCC) 
  • R-Value Work:  0.200 (Depositor), 0.202 (DCC) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 56.235α = 90
b = 137.487β = 112.333
c = 66.513γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
REFMACrefinement
Aimlessdata scaling
XDSdata reduction
MOLREPphasing
Cootmodel building

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Austrian Science FundAustria--

Revision History  (Full details and data files)

  • Version 1.0: 2023-03-08
    Type: Initial release
  • Version 1.1: 2023-09-20
    Changes: Data collection, Database references, Refinement description
  • Version 1.2: 2024-02-07
    Changes: Refinement description