8A3C

Nudaurelia capensis omega virus maturation intermediate captured at pH5.9 (insect cell expressed VLPs)

• PDB DOI: https://doi.org/10.2210/pdb8A3C/pdb
• EM Map EMD-15112: EMDB EMDataResource

• Classification: VIRUS LIKE PARTICLE
• Organism(s): Nudaurelia capensis omega virus
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 2022-06-08 Released: 2022-12-28 
• Deposition Author(s): Castells-Graells, R., Hesketh, E.L., Johnson, J.E., Ranson, N.A., Lawson, D.M., Lomonossoff, G.P.
• Funding Organization(s): Biotechnology and Biological Sciences Research Council (BBSRC), Wellcome Trust

---

Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.92 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental

Literature

Nudaurelia capensis omega virus maturation intermediate captured at pH5.9 (insect cell expressed VLPs)

Castells-Graells, R., Hesketh, E.L., Johnson, J.E., Ranson, N.A., Lawson, D.M., Lomonossoff, G.P.

To be published.

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Homo 240-mer - A240 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 279.57 kDa 
• Atom Count: 17,197 
• Modelled Residue Count: 2,246 
• Deposited Residue Count: 2,576 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
p70	A, B, C, D	644	Nudaurelia capensis omega virus	Mutation(s): 0
UniProt
Find proteins for Q4TVS9 (Nudaurelia capensis omega virus) Explore Q4TVS9  Go to UniProtKB:  Q4TVS9

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.92 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	3.0.3
MODEL REFINEMENT	PHENIX	1.20rc4

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-12-28 
Deposition Author(s): Castells-Graells, R., Hesketh, E.L., Johnson, J.E., Ranson, N.A., Lawson, D.M., Lomonossoff, G.P.

---

Funding Organization	Location	Grant Number
Biotechnology and Biological Sciences Research Council (BBSRC)	United Kingdom	BB/L014130/1
Biotechnology and Biological Sciences Research Council (BBSRC)	United Kingdom	BBS/E/J/000PR9794
Wellcome Trust	United Kingdom	108466/Z/15/Z

Revision History  

• Version 1.0: 2022-12-28
  Type: Initial release
  
• Version 1.1: 2024-07-24
  Changes: Data collection, Refinement description