7ZJO | pdb_00007zjo

Phosphorylated Thalassospira sp. esterase

PDB DOI: https://doi.org/10.2210/pdb7ZJO/pdb

Classification: HYDROLASE
Organism(s): Thalassospira sp.
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-04-11 Released: 2025-10-29
Deposition Author(s): Lund, B.A.
Funding Organization(s): Research Council of Norway

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free:
0.198 (Depositor), 0.201 (DCC)
R-Value Work:
0.167 (Depositor), 0.168 (DCC)
R-Value Observed:
0.168 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Phosphorylated Thalassospira sp. esterase

Lund, B.A.

To be published.

Macromolecule Content

Total Structure Weight: 138.51 kDa
Atom Count: 10,532
Modeled Residue Count: 1,259
Deposited Residue Count: 1,268
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lipase	A, B, C, D	317	Thalassospira sp.	Mutation(s): 0 Gene Names: CMO05_03125

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
1PE Query on 1PE Download:Ideal Coordinates CCD File SDF format, chain N [auth C] SDF format, chain I [auth B] MOL2 format, chain N [auth C] MOL2 format, chain I [auth B] mmCIF format, chain N [auth C] mmCIF format, chain I [auth B]	I [auth B], N [auth C]	PENTAETHYLENE GLYCOL C₁₀ H₂₂ O₆ JLFNLZLINWHATN-UHFFFAOYSA-N		Interactions Focus chain I [auth B] Focus chain N [auth C] Interactions & Density Focus chain I [auth B] Focus chain N [auth C]
NPO Query on NPO Download:Ideal Coordinates CCD File SDF format, chain F [auth B] SDF format, chain M [auth C] SDF format, chain T [auth D] MOL2 format, chain F [auth B] MOL2 format, chain M [auth C] MOL2 format, chain T [auth D] mmCIF format, chain F [auth B] mmCIF format, chain M [auth C] mmCIF format, chain T [auth D]	F [auth B], M [auth C], T [auth D]	P-NITROPHENOL C₆ H₅ N O₃ BTJIUGUIPKRLHP-UHFFFAOYSA-N		Interactions Focus chain F [auth B] Focus chain M [auth C] Focus chain T [auth D] Interactions & Density Focus chain F [auth B] Focus chain M [auth C] Focus chain T [auth D]
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain J [auth B] SDF format, chain O [auth C] SDF format, chain H [auth B] MOL2 format, chain J [auth B] MOL2 format, chain O [auth C] MOL2 format, chain H [auth B] mmCIF format, chain J [auth B] mmCIF format, chain O [auth C] mmCIF format, chain H [auth B]	H [auth B], J [auth B], O [auth C]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain H [auth B] Focus chain J [auth B] Focus chain O [auth C] Interactions & Density Focus chain H [auth B] Focus chain J [auth B] Focus chain O [auth C]
EDO Query on EDO Download:Ideal Coordinates CCD File SDF format, chain L [auth B] SDF format, chain P [auth C] SDF format, chain Q [auth C] SDF format, chain R [auth C] SDF format, chain S [auth C] SDF format, chain U [auth D] SDF format, chain K [auth B] SDF format, chain G [auth B] SDF format, chain E [auth A] MOL2 format, chain L [auth B] MOL2 format, chain P [auth C] MOL2 format, chain Q [auth C] MOL2 format, chain R [auth C] MOL2 format, chain S [auth C] MOL2 format, chain U [auth D] MOL2 format, chain K [auth B] MOL2 format, chain G [auth B] MOL2 format, chain E [auth A] mmCIF format, chain L [auth B] mmCIF format, chain P [auth C] mmCIF format, chain Q [auth C] mmCIF format, chain R [auth C] mmCIF format, chain S [auth C] mmCIF format, chain U [auth D] mmCIF format, chain K [auth B] mmCIF format, chain G [auth B] mmCIF format, chain E [auth A]	E [auth A] G [auth B] K [auth B] L [auth B] P [auth C] E [auth A], G [auth B], K [auth B], L [auth B], P [auth C], Q [auth C], R [auth C], S [auth C], U [auth D]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Focus chain G [auth B] Focus chain K [auth B] Focus chain L [auth B] Focus chain P [auth C] Focus chain Q [auth C] Focus chain R [auth C] Focus chain S [auth C] Focus chain U [auth D] Interactions & Density Focus chain E [auth A] Focus chain G [auth B] Focus chain K [auth B] Focus chain L [auth B] Focus chain P [auth C] Focus chain Q [auth C] Focus chain R [auth C] Focus chain S [auth C] Focus chain U [auth D]