7ZDZ

Cryo-EM structure of the human inward-rectifier potassium 2.1 channel (Kir2.1)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Cryo-electron microscopy unveils unique structural features of the human Kir2.1 channel.

Fernandes, C.A.H.Zuniga, D.Fagnen, C.Kugler, V.Scala, R.Pehau-Arnaudet, G.Wagner, R.Perahia, D.Bendahhou, S.Venien-Bryan, C.

(2022) Sci Adv 8: eabq8489-eabq8489

  • DOI: https://doi.org/10.1126/sciadv.abq8489
  • Primary Citation of Related Structures:  
    7ZDZ

  • PubMed Abstract: 

    We present the first structure of the human Kir2.1 channel containing both transmembrane domain (TMD) and cytoplasmic domain (CTD). Kir2.1 channels are strongly inward-rectifying potassium channels that play a key role in maintaining resting membrane potential. Their gating is modulated by phosphatidylinositol 4,5-bisphosphate (PIP 2 ). Genetically inherited defects in Kir2.1 channels are responsible for several rare human diseases, including Andersen's syndrome. The structural analysis (cryo-electron microscopy), surface plasmon resonance, and electrophysiological experiments revealed a well-connected network of interactions between the PIP 2 -binding site and the G-loop through residues R312 and H221. In addition, molecular dynamics simulations and normal mode analysis showed the intrinsic tendency of the CTD to tether to the TMD and a movement of the secondary anionic binding site to the membrane even without PIP 2 . Our results revealed structural features unique to human Kir2.1 and provided insights into the connection between G-loop and gating and the pathological mechanisms associated with this channel.


  • Organizational Affiliation

    UMR 7590, CNRS, Muséum National d'Histoire Naturelle, IRD, Institut de Minéralogie, Physique des Matériaux et de Cosmochimie, IMPMC, Sorbonne Université, 75005 Paris, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Inward rectifier potassium channel 2
A, B, C, D
427Homo sapiensMutation(s): 0 
Gene Names: KCNJ2IRK1
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P63252 (Homo sapiens)
Explore P63252 
Go to UniProtKB:  P63252
PHAROS:  P63252
GTEx:  ENSG00000123700 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP63252
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20
MODEL REFINEMENTCoot0.9.7
RECONSTRUCTIONRELION3.0.7

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Agence Nationale de la Recherche (ANR)FranceANR-11-EQPX-0008
The French Muscular Dystrophy Telethon (AFM-Telethon)France23207
The French Muscular Dystrophy Telethon (AFM-Telethon)France23210

Revision History  (Full details and data files)

  • Version 1.0: 2022-09-28
    Type: Initial release
  • Version 1.1: 2022-10-05
    Changes: Database references
  • Version 1.2: 2024-11-13
    Changes: Data collection, Refinement description, Structure summary