7Z0K

human PEX13 SH3 in complex with PEX5 W4 (WxxxF/Y) motif


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.194 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Intramolecular autoinhibition of human PEX13 modulates peroxisomal import

Gaussmann, S.Ott, J.Zak, K.M.Delhommel, F.Popowicz, G.M.Schliebs, W.Erdmann, R.Sattler, M.

(2022) bioRxiv 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Peroxisomal membrane protein PEX13,Peroxisomal targeting signal 1 receptor
A, B
105Homo sapiensMutation(s): 0 
Gene Names: PEX13PEX5PXR1
UniProt & NIH Common Fund Data Resources
Find proteins for Q92968 (Homo sapiens)
Explore Q92968 
Go to UniProtKB:  Q92968
PHAROS:  Q92968
GTEx:  ENSG00000162928 
Find proteins for P50542 (Homo sapiens)
Explore P50542 
Go to UniProtKB:  P50542
PHAROS:  P50542
GTEx:  ENSG00000139197 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsQ92968P50542
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.194 
  • Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 87.662α = 90
b = 87.662β = 90
c = 66.112γ = 120
Software Package:
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
Cootmodel building
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanyFOR1905

Revision History  (Full details and data files)

  • Version 1.0: 2023-03-08
    Type: Initial release
  • Version 1.1: 2024-02-07
    Changes: Data collection, Refinement description