Human langerin carbohydrate recognition domain in complex with an alpha-mannoside ligand
Wangkanont, K.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
CD207 molecule | 156 | Homo sapiens | Mutation(s): 0  Gene Names: CD207 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9UJ71 (Homo sapiens) Explore Q9UJ71  Go to UniProtKB:  Q9UJ71 | |||||
PHAROS:  Q9UJ71 GTEx:  ENSG00000116031  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9UJ71 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
SER-TRP | 2 | unidentified | Mutation(s): 0  | ||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
JMI (Subject of Investigation/LOI) Query on JMI | G [auth A], J [auth B], N [auth C], R [auth D] | ~{N}-[2-[4-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxyphenyl]ethyl]ethanamide C16 H23 N O7 JVYCDFJBIOIPDL-OWYFMNJBSA-N | |||
TRP Query on TRP | L [auth C], P [auth D] | TRYPTOPHAN C11 H12 N2 O2 QIVBCDIJIAJPQS-VIFPVBQESA-N | |||
CA Query on CA | F [auth A], I [auth B], M [auth C], Q [auth D] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
CL Query on CL | H [auth A], K [auth B], O [auth C], S [auth D] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
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a = 80.03 | α = 90 |
b = 80.03 | β = 90 |
c = 90.07 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
Aimless | data scaling |
MOSFLM | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Chulalongkorn University | Thailand | -- |