7YS9

Crystal Structure of UDP-glucose 4-epimerase (Rv3634c) in complex with both UDP-Glucose and UDP-Galactose in chainA from Mycobacterium tuberculosis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.188 

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Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Crystal Structure of UDP-glucose 4-epimerase (Rv3634c) in complex with both UDP-Glucose and UDP-Galactose in chainA from Mycobacterium tuberculosis

Yadav, S.Bhatia, I.Biswal, B.K.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
UDP-glucose 4-epimerase
A, B
320Mycobacterium tuberculosis H37RvMutation(s): 0 
Gene Names: galE1Rv3634c
EC: 5.1.3.2
UniProt
Find proteins for P9WN67 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
Explore P9WN67 
Go to UniProtKB:  P9WN67
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP9WN67
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAD (Subject of Investigation/LOI)
Query on NAD

Download Ideal Coordinates CCD File 
C [auth A],
G [auth B]
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
GDU (Subject of Investigation/LOI)
Query on GDU

Download Ideal Coordinates CCD File 
F [auth A],
H [auth B]
GALACTOSE-URIDINE-5'-DIPHOSPHATE
C15 H24 N2 O17 P2
HSCJRCZFDFQWRP-ABVWGUQPSA-N
UPG (Subject of Investigation/LOI)
Query on UPG

Download Ideal Coordinates CCD File 
D [auth A]URIDINE-5'-DIPHOSPHATE-GLUCOSE
C15 H24 N2 O17 P2
HSCJRCZFDFQWRP-JZMIEXBBSA-N
EDO
Query on EDO

Download Ideal Coordinates CCD File 
E [auth A],
I [auth B]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.188 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 51.347α = 90
b = 76.851β = 91.81
c = 80.163γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing
PDB_EXTRACTdata extraction

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Indian Council of Medical ResearchIndiaR.12014/03/2019-HR

Revision History  (Full details and data files)

  • Version 1.0: 2023-08-16
    Type: Initial release